Basic Information

Insect: Liopterus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_963971575.1
Location: OZ020611.1:179257554-179262651[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.5e-05 0.0035 19.6 1.5 1 23 167 189 167 189 0.96

2 11 0.0019 0.45 12.9 5.3 1 23 194 216 194 216 0.97

3 11 1.8e-05 0.0043 19.3 2.1 1 23 224 246 224 246 0.98

4 11 9.5e-08 2.3e-05 26.5 1.6 1 23 252 274 252 274 0.98

5 11 1.3e-05 0.0031 19.8 0.8 1 23 283 305 283 305 0.97

6 11 3e-07 7.3e-05 24.9 0.4 1 23 311 333 311 333 0.96

7 11 0.00029 0.069 15.5 0.7 1 23 339 361 339 361 0.99

8 11 8.7e-05 0.021 17.1 2.5 1 23 367 389 367 389 0.98

9 11 0.0074 1.8 11.1 0.3 2 23 396 417 395 417 0.97

10 11 2.5e-06 0.00059 22.0 0.9 1 23 423 445 423 445 0.99

11 11 3e-06 0.00073 21.7 2.0 1 23 451 473 451 473 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.5e-05	0.0035	19.6	1.5	1	23	167	189	167	189	0.96
2	11	0.0019	0.45	12.9	5.3	1	23	194	216	194	216	0.97
3	11	1.8e-05	0.0043	19.3	2.1	1	23	224	246	224	246	0.98
4	11	9.5e-08	2.3e-05	26.5	1.6	1	23	252	274	252	274	0.98
5	11	1.3e-05	0.0031	19.8	0.8	1	23	283	305	283	305	0.97
6	11	3e-07	7.3e-05	24.9	0.4	1	23	311	333	311	333	0.96
7	11	0.00029	0.069	15.5	0.7	1	23	339	361	339	361	0.99
8	11	8.7e-05	0.021	17.1	2.5	1	23	367	389	367	389	0.98
9	11	0.0074	1.8	11.1	0.3	2	23	396	417	395	417	0.97
10	11	2.5e-06	0.00059	22.0	0.9	1	23	423	445	423	445	0.99
11	11	3e-06	0.00073	21.7	2.0	1	23	451	473	451	473	0.98

Sequence Information

Coding Sequence: ATGGAAATAATAGTGTACGACgcagaaaaaatatgtagatcCTGTTTAAAACAACCAGAAGAAATGatatcaatttttgaaattgtttCTGATTTCGGGGAGAATGTGAAAATAAATGATATCCTTAAAACATTGACAACTTTTGagGTTGTAGAAGGAGATGGACTACCAGAAAAAATTTGTTACGAATGTCTTAACGAACTTAAAAGATTTAACCTTTTTATCAAACAACTACAAGAATCCGATGAAAAACTTAAGTTTTGCCAACAAGCTTTATTAAATGCACAAACTACAGGTATTACAGAAATAACAGTATCAGAAGAATTGTACAATGAGGACACAGTTTATTCAAACGCTTTCGCAGTTGATGTAAAAATTGAAGATGCTGTGTATGAAGataatgataaatataatgaagaagaaaaacaagaTGTCAATGAAATACTCTCTGATGAAGAGAATGAAGAAAATAGTAAGcagattaaaaagaaaaaaggatATTTGTGTACGAtatgtaataaatcatttagaactaaaaaattattaggtGCTCATAAACAAAGTCATGCATCAAAAACGCATATGTGTACGGAGTGCGGTAAAGAATTTTTAGAACATATGCATTTAAAAGTTCATATGAGATCGCATTTTACCGATGAAGAGAAACCGTTTAAATGTGAAAATTGTGGTCAGCAATATGCATATCAGTATCAACTAAATCAACATATGTTTAAACATAGCGATGAAAAACCATTTCCCTGTCCACATTGTGATAAAGGTTGTGTTACGGCCGATAGTTTAAAAAGACATATGAGAGTGCATGATGTGAATTATAAGAAGCAGAAGCATGTTTGTACGATATGTCAGAAGGAATTTGCATATCCCAGTTTTTTAGCAGAGCATATGAAGAACCATACAGGAGAGAAGCCGTTCTTGTGTAGTTATTGTGGAAAAGGTTTTAGGCAGAAAGGAGCGTTGCAGTATCATATTAGAATTCATACGGGAACTAAACCATATTCATgtgatatttgtaaaaatacttttatgtCCCAAGGAATATTAAAAGTGCATATGAGACGACATACAAATGAGAGACCCTACATTTGTGATATATGTGGCAGAGCGTTCAGGCAATCGACAGACATGAGATGTCACCGAAGAACACATACAGGAGACAAACCAGTGCAGTGTACTGTCTGCATGAAAAGAATGGCAACAACAgGTCAACTGACGGTCCATATGCGTATGCACACCGGGGAAAAGCCATATCCATGCAGCATGTGCAATAAATCGTTCGCGACCCGCACCATGGTTGTCAAACATCTACGCACACACACGGGCGAGCGACCTTATGTTTGTAACTGCTGTGGCAAGGCCTTCTCACAGAGCAGCTCACTCAACACGCACCTTAAAATACACGCACGGAACAAGGACATCAACTGCACCTCCTCCATCATCAACATGTAG
Protein Sequence: MEIIVYDAEKICRSCLKQPEEMISIFEIVSDFGENVKINDILKTLTTFEVVEGDGLPEKICYECLNELKRFNLFIKQLQESDEKLKFCQQALLNAQTTGITEITVSEELYNEDTVYSNAFAVDVKIEDAVYEDNDKYNEEEKQDVNEILSDEENEENSKQIKKKKGYLCTICNKSFRTKKLLGAHKQSHASKTHMCTECGKEFLEHMHLKVHMRSHFTDEEKPFKCENCGQQYAYQYQLNQHMFKHSDEKPFPCPHCDKGCVTADSLKRHMRVHDVNYKKQKHVCTICQKEFAYPSFLAEHMKNHTGEKPFLCSYCGKGFRQKGALQYHIRIHTGTKPYSCDICKNTFMSQGILKVHMRRHTNERPYICDICGRAFRQSTDMRCHRRTHTGDKPVQCTVCMKRMATTGQLTVHMRMHTGEKPYPCSMCNKSFATRTMVVKHLRTHTGERPYVCNCCGKAFSQSSSLNTHLKIHARNKDINCTSSIINM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -