Lhae041060.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Liopterus haemorrhoidalis
Gene Symbol
Snai1
Assembly
GCA_963971575.1
Location
OZ020618.1:8463643-8473400[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00071 0.17 14.3 0.2 1 23 334 356 334 356 0.95
2 12 3.5e-05 0.0085 18.4 1.6 1 23 364 386 364 386 0.99
3 12 6.3e-06 0.0015 20.7 0.4 2 23 394 415 393 415 0.97
4 12 9.6e-06 0.0023 20.2 1.2 1 23 421 443 421 443 0.98
5 12 2.9e-05 0.0069 18.7 2.6 1 23 450 472 450 472 0.99
6 12 9e-06 0.0022 20.2 0.5 1 23 478 500 478 500 0.96
7 12 9e-06 0.0022 20.2 0.1 1 23 506 528 506 528 0.98
8 12 8.9e-07 0.00021 23.4 1.2 1 23 534 557 534 557 0.96
9 12 7e-05 0.017 17.4 0.7 1 23 563 586 563 586 0.96
10 12 2.8e-05 0.0066 18.7 2.6 1 23 592 614 592 614 0.99
11 12 0.00014 0.033 16.5 0.4 1 23 620 642 620 642 0.94
12 12 0.00036 0.087 15.2 0.1 1 23 648 672 648 672 0.94

Sequence Information

Coding Sequence
atgactacagaaagttatgAGGTGAGGTCTAACCCTCATTGTCTCATATGTAACAGTCGAGTGAGCGTATCAACTAGAAATTCATATCAAATATTCAATAACCAAGTTCAAACATGTTCGGAAAGACCTGTAAATTGTATAATGTCTTCCGTATTAGGGAAGGAATTAAACGAAACCACTGTACATTCAGCAATCATTTGCAAAAAGTGTTACAAGTTATTCAACGAAGTAGACGAACTAGAAATGAGATTAGCGGAAATAAAAGTAGAATTAGTAGGAAATTACAAGAGGTCTGTTATGAAGTATCAGAACAATGGAAATATTGTTATACGAATCGATGATTCAGGGGAATCTGAAGACGTTCAACAACTTCCGAAGGTGAAAGAAAGAATCATCGCTAAGAAAATGATTACTATACCTGAgGACGATAATGAATCGCATTTAGAAGACATAGAATCCCAACTAGCAAAACTTCATGAAGAAGACGCTAACAAAGACCAAGACGTAGAAGAAATGGAACATGAAGAAGGTCAAATGGTCGAGATACATATAGAGCAAGACAATTCATTTCACGGCTTTGAAGTAGATGTACAGACAGAAGAAACAGTTGACGCAGGCGCGGTGGATAATTCCGATGACTCGGATTATGAACCTCCAAATAAACTTAGAGAAATGGTTGAAGATCAAAATGGACTTGACATAGACAACACTTCAGCCTTGTTAGAAGCTGCAGCGCTAGCCGAACAAACACTTACAGGAGaagAGGTGCAAATCAAGATTGAACCAGGATTAGAATATGAAAAGCCATTGAAAAGAAAAATGGCTTCAATTCTAAGTAGAAGGCCTAGTAAAAAACAGATCaaagaagaatatttagaaCCTATTGTAGCTCGAGATGGTGGTATATACACTTGTCTCGCTTGTGAAGGTGATGAAAAATTTGCCGGAGAACCCAAACAAATAATGTTACATGTTAAAAATGACCACGATCTCAGGGTGTATATATGTGATGTCTGCGGACAAGATTTTCGAAAACGTAATGAACTTAGTTTGCATCTCGATGAACATGTTGCTACGGAAGAAGGAGATTTTCAATGTGAGGTCTGTAATAGAATATTTTCGAATTTAAGACTATTTAGAATACATAAAAGGATGCATTATCCACAGTCGAAGTTGTGGACCTGTGAAACTTGCGGAAAGAGATATAGCTCTCGAAATCTTCTTGAAGAACATATAAACACCCACACCGGTATTCGACCTTACGTTTGTCAAACCTGCGGTAAAGATTTCGCTAGTAAATATACGTACAAAGCCCACGAAAAAACCCACGAAGTTAGACCACGCCCCTATCAATGTGCCCACTGTCCTAAATCCTTTCTAAGCCAACAAAACTTGACTCAACATGAACGCACACATTCTGGTATCAAAGAATTCGTCTGTCATCTGTGTGGTAAAGCGTTTGGTTCACCTCATAATTTGGAAGTTCATTCGATAGTTCATACGGGTTATAAGCCATTCATTTGTGGTATTTGTGGGAAAGCGTTTGCGAGGAAGGCAGAGATTAGAGATCATGAACGTACGCATACTGGAGAACGTCCATATCAGTGTGAATTTTGTGGAGCTACATTTAGTCAACGCAGTAATTTGCAGAGTCATAAGAGAGCTACACATTACGATGACAAGAGGTATAAGTGTCAAGCCTGCGGTAAAGGATTCAAGCGAAGAAGATTATTGGACTATCATATGAAAGCAGCACACACAGGCGAACGTCCATTCAAATGTACAGTTTGTGAAGCCACCTTCGTTTATCCTGAACACTTCAAAAAGCACAGAAGAATTCACACGGGCGAGAAACCGTTCTTATGTGAGGTGTGTGGCAAAGCTTTCAACAGTAGAGACAACAGAAATGCCCACAGATTTGTGCATAGTGATAAAAAACCGTATGAATGTCTTGTTTGCGGAATGGGATTCATGAGAAAACCTCTTCTGTACGCTCATATGCAAACGCAGggCCATTTGAACGATACTATAGTAGTCAATCAACCTCGTTTAACAACGGATGATGATCAAATCGTAACTGTGAACGCTGACGGTGAGATGGAGCTAGTTGAAGGTGCTGAGGTGCTAGGAGGCGGTAGTGAAGACGGTGAAGCTAGTGAGGACACCAAACTTTACATAGCAGATCTCAAAGAACATGTTATCATTCAAGAGGGTCAGTTATATGGAAATAGTAAAGGAACTGTTATTGTTGGAGAACCATTGGATGATGATGTCCAGGATGCTGTAAAACATCTCATCATTGATGGACAGCAAGTGCAATTCGCGGAACAAGACGATGATTCTGAAACTCATACCATAATGACTAcacaacattttataaatgaaaatggTGAATATGAAGAAGTTGTAGCAGATGCTCTAGTCGAAGGTGATACACAAACTATTCACACTTCAACAGGACCTattcaattggtgcaaattAGGCTACCTTCAGCTGACGGTGAAGAAGGCGAAGAAGCGTGGGTGAAGTTTGTACCTCAAGAAGAAGAGGAAGATGTATGA
Protein Sequence
MTTESYEVRSNPHCLICNSRVSVSTRNSYQIFNNQVQTCSERPVNCIMSSVLGKELNETTVHSAIICKKCYKLFNEVDELEMRLAEIKVELVGNYKRSVMKYQNNGNIVIRIDDSGESEDVQQLPKVKERIIAKKMITIPEDDNESHLEDIESQLAKLHEEDANKDQDVEEMEHEEGQMVEIHIEQDNSFHGFEVDVQTEETVDAGAVDNSDDSDYEPPNKLREMVEDQNGLDIDNTSALLEAAALAEQTLTGEEVQIKIEPGLEYEKPLKRKMASILSRRPSKKQIKEEYLEPIVARDGGIYTCLACEGDEKFAGEPKQIMLHVKNDHDLRVYICDVCGQDFRKRNELSLHLDEHVATEEGDFQCEVCNRIFSNLRLFRIHKRMHYPQSKLWTCETCGKRYSSRNLLEEHINTHTGIRPYVCQTCGKDFASKYTYKAHEKTHEVRPRPYQCAHCPKSFLSQQNLTQHERTHSGIKEFVCHLCGKAFGSPHNLEVHSIVHTGYKPFICGICGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCQACGKGFKRRRLLDYHMKAAHTGERPFKCTVCEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTDDDQIVTVNADGEMELVEGAEVLGGGSEDGEASEDTKLYIADLKEHVIIQEGQLYGNSKGTVIVGEPLDDDVQDAVKHLIIDGQQVQFAEQDDDSETHTIMTTQHFINENGEYEEVVADALVEGDTQTIHTSTGPIQLVQIRLPSADGEEGEEAWVKFVPQEEEEDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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