Lhae052875.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_963971575.1
- Location
- OZ020622.1:13557269-13565317[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.1e-06 0.0015 20.8 1.2 1 23 251 273 251 273 0.98 2 11 4.6e-08 1.1e-05 27.4 2.7 1 23 279 301 279 301 0.98 3 11 0.00029 0.069 15.5 3.3 3 23 310 330 308 330 0.96 4 11 5.6e-07 0.00013 24.0 0.1 2 23 337 358 336 358 0.97 5 11 5.2e-07 0.00012 24.1 2.9 1 23 364 386 364 386 0.99 6 11 0.00012 0.03 16.7 3.5 1 23 392 414 392 414 0.98 7 11 3.5e-06 0.00085 21.5 2.3 1 23 420 442 420 442 0.98 8 11 1.4e-05 0.0034 19.6 0.2 1 23 448 470 448 470 0.98 9 11 3.2e-05 0.0076 18.5 3.3 1 23 476 500 476 500 0.97 10 11 6e-07 0.00014 24.0 1.2 1 23 506 528 506 528 0.98 11 11 3.3e-05 0.0079 18.5 5.2 1 23 534 556 534 557 0.95
Sequence Information
- Coding Sequence
- ATGGATAATTCCCTAATGATTGatataaatgaagaaaatttaaattatatgccttttaataatgttaattctATAGAAAGATTATGTAGAACTTGTCTCACTGAAAGAGGAGAACTGAATTCTTTGTTTAATGACCGAATAAATGAAATGCTTATGTCAGTTACTTCGGTACAGattgGCGTAAACGATGGTTTACCCCCTCATATTTGTTCAcaatgtgttttaaatgtaAGTCGTGCATACACTTTTAAACAACAAGCAGAAACTTCCGATGCAACACTGCGACAATatattagtaattataataatccACAAGAGACCTTGCCAAGTATTTTAGAAATGGGGTATGATATTGATAATATACAAATGCCGGTTCCGCAAGACGCAACAGATGATATCATGTCTAACGAtagtaaaagtaatttttttattatggataataGTTCACATGAAACACTTATAATGAAAGATgagcacaataaaataattaaggatGAAGTgagtaaaatttatgaaaatggaAATATCGTTAAAGATgagacaaTGCCCGTACCAGCACCTGAACAGACTGAAGAATTATTATCGGATATAAAAACTAGTTGTTTTGATGATAACATAGATTTAAACGTTAAAAACgaactattaaaaattgaagagaaaattaatgaaaaaacagATTccgaagaaaatgtttttacttTTTCCGATAATGACAATGATAATATAGACCTTTCATCTGATTCTGAAGATTTTATTTGCAACATTTGCAACGCAGTTTGTAaagattctGATGATTTGAAAAAGCATGTTAAAACTCATGAGAAATCTAGAAATCATAAATGTGTAGAATGTGGGAAATCTTTTCGAAATAAAGTTGGTTTACGAACTCATATGAGAACACATGGGATTGGAGAGAGGAAACATTTATGCACGCATTGTGGGAAAAGATTTTACGAACTCAATGAATTAATGATTCATACTCGAGTACATACAGGTGAAAGACCTGTAGTTTGTGATACCTGCGGAAAATCTTTTGCAGATCCAAGAAGTTTAgcgaaacatattaaaatacataCAGgtGAAAAGAAATTCCAATGTGACATATGCAATAAACGTTTTATCCATTCTTACACCTTGACCGCCCATCGTCGCGTCCATACAGGTGAAAAACCATTTGTTTGTTCAACCTGCGGTCACGCATGCGCGACATCAACACAATTAACATTGCATACCCGTACACACACCCGCGAGAAACCGTACTGTTGTACGTTATGTCCTAAGTCATTCGCGAGCCGAAGTGGGTTGTCAACTCATCAAATGACTCACACAGGAGAGAGAAGGTATATTTGTAGTATTTGTGGAAAGGGAGCGAGGACTTCGACTGATTTAGCTTCCCATACTCGCACCCACACAGGAGAGAAACCGTATTCTTGTAAAGTACCATCgtgtactaaaaaatataagacCCATAGTCAGCTTAGTGCCCACATGAGAACGCATACagGTGAAAAAAGACATAAATGCAATGTTTGTGGCAAAGCTTTTGCTGATACTTCCCAACTGAAAAGTCATACCAACATCCATACAGGGACAAAACCATATTGCTGTGGAACCTGCGGCCAGAGATTTACACAAAGTGGTTCTTTGTACACTCACATGAAATCACATCATAGACATATTGTACCATAA
- Protein Sequence
- MDNSLMIDINEENLNYMPFNNVNSIERLCRTCLTERGELNSLFNDRINEMLMSVTSVQIGVNDGLPPHICSQCVLNVSRAYTFKQQAETSDATLRQYISNYNNPQETLPSILEMGYDIDNIQMPVPQDATDDIMSNDSKSNFFIMDNSSHETLIMKDEHNKIIKDEVSKIYENGNIVKDETMPVPAPEQTEELLSDIKTSCFDDNIDLNVKNELLKIEEKINEKTDSEENVFTFSDNDNDNIDLSSDSEDFICNICNAVCKDSDDLKKHVKTHEKSRNHKCVECGKSFRNKVGLRTHMRTHGIGERKHLCTHCGKRFYELNELMIHTRVHTGERPVVCDTCGKSFADPRSLAKHIKIHTGEKKFQCDICNKRFIHSYTLTAHRRVHTGEKPFVCSTCGHACATSTQLTLHTRTHTREKPYCCTLCPKSFASRSGLSTHQMTHTGERRYICSICGKGARTSTDLASHTRTHTGEKPYSCKVPSCTKKYKTHSQLSAHMRTHTGEKRHKCNVCGKAFADTSQLKSHTNIHTGTKPYCCGTCGQRFTQSGSLYTHMKSHHRHIVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -