Lhae063696.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_963971575.1
- Location
- OZ020626.1:1548666-1550074[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00012 0.028 16.8 4.4 1 23 95 117 95 117 0.99 2 12 1.4e-05 0.0033 19.6 0.2 1 23 123 145 123 145 0.99 3 12 7.4e-06 0.0018 20.5 0.9 1 23 151 173 151 173 0.94 4 12 0.00017 0.04 16.3 1.1 1 23 179 201 179 201 0.98 5 12 5.7e-05 0.014 17.7 0.4 1 23 207 229 207 229 0.97 6 12 1.4e-07 3.3e-05 26.0 1.3 1 23 235 257 235 257 0.98 7 12 1.5e-05 0.0035 19.6 3.5 1 19 263 281 263 283 0.96 8 12 1.3e-05 0.003 19.8 2.5 1 23 291 313 291 313 0.97 9 12 1.3e-06 0.00031 22.9 3.4 1 23 319 341 319 341 0.98 10 12 1e-05 0.0025 20.1 0.8 5 23 350 368 347 368 0.96 11 12 3.1e-07 7.5e-05 24.8 1.0 1 23 374 396 374 396 0.97 12 12 1.6e-06 0.00039 22.6 3.6 3 23 404 424 402 424 0.98
Sequence Information
- Coding Sequence
- ATGATTAAACAGGAAACTGaaatcaagtctgaacctgacAACGCCagtgttttttatgaaaatgaacTGACGAGAGATGAAGCAGAGTCCTCTACTATCAATAACAATGAATCAAACATCAACCCAGAAGAGATTTTCATCAAGACTGAACATACAGACGTCAACGAATACGAAGAAGAAGAGGTGGAAAGTACAGGCGATTATGAAGCAGAACTATCAGGAGAACCAACTGAAAAACCTAACAAAACCCTGAAGACTAAAACAGAAAAAGAGAAAAAGCGTTACAAATGTGTTAcatgtaacaaatatttttcgtaCAAATGTGCTTTAGTAGTCCACCAAAGGCGACATacaggagagaaaccattcaaatgtgtacACTGTGATAGAGGCTTTCCAGCATTACCAAATCTAATAGTTCACATCCGTACTCACACAGGAGAAAAACCTTTTAAATGTGATTTATGTGgaaaattattttcacaaaGTTCAAGTCTCGTTAAACATAAAGTTTTACATACAGGagaaaaacctttcaaatgtgaacaatgtGCTAAAGCATTTCCCATTTACTCACATCTATTACGTCACAGATTGATACACTCTGAACAAAAACCCTATAACTGTAATCAATGTGGAAAGGGTTTTATAATTAGAGCACACTTAGTTAGACATGAACTTGTTCATTCTGGTTTAAGACCGTTCAAATGCAATGAATGTGGTAAAGCATTTCCGGAAAGTTCTCATCTAGCGCGGCATAAACTTACACATACTGGTCTTAAACCATTTTCTTGTGATCAATGCGGCAAAAACTTTTCCCAAAACTCCCATTTACATAAACATAAAGTGTGTCATACGGGACTCAAGCCGTATTCTTGTGATGAGTGTCATAAAGCATTTTCCAGGGGTTCCCATCTTGCTAGTCATAAATTAATCCATTCAGGTATCAAGCCTTTCAAGTGTGAGCAATGTGGAATGTGTTTTTCGCGTAGTTCCACCTTATCCAAACATACTcttatacattctggagaaaaaccttaTAAATGTGAGTGTGGGAAAGTTTATTCCGATAGCTGGCATTTGATAGCCCATCAAAGGACTCATACTGGACAAATGCCTTTTAAATGTGAGATTTGTGAAAAAAGTTTCTCGCAAAATTCTTATTTAgtgaaacataaaattatacataCCGGTGAAAAGCCATTTGGATGTCAGCAATGTGGGAAAACATTTGCTAGAAGTTCCTGTTTAATTAGGCATAAAAGGACACATGCTAAAAAACAACttagtttagtttttaaaactgtttag
- Protein Sequence
- MIKQETEIKSEPDNASVFYENELTRDEAESSTINNNESNINPEEIFIKTEHTDVNEYEEEEVESTGDYEAELSGEPTEKPNKTLKTKTEKEKKRYKCVTCNKYFSYKCALVVHQRRHTGEKPFKCVHCDRGFPALPNLIVHIRTHTGEKPFKCDLCGKLFSQSSSLVKHKVLHTGEKPFKCEQCAKAFPIYSHLLRHRLIHSEQKPYNCNQCGKGFIIRAHLVRHELVHSGLRPFKCNECGKAFPESSHLARHKLTHTGLKPFSCDQCGKNFSQNSHLHKHKVCHTGLKPYSCDECHKAFSRGSHLASHKLIHSGIKPFKCEQCGMCFSRSSTLSKHTLIHSGEKPYKCECGKVYSDSWHLIAHQRTHTGQMPFKCEICEKSFSQNSYLVKHKIIHTGEKPFGCQQCGKTFARSSCLIRHKRTHAKKQLSLVFKTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -