Basic Information

Insect: Liopterus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_963971575.1
Location: OZ020611.1:231909097-231917205[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.081 19 7.8 1.3 1 23 132 154 132 154 0.97

2 13 1.9e-06 0.00046 22.4 0.4 2 23 157 178 156 178 0.97

3 13 0.00019 0.046 16.1 0.1 1 23 184 206 184 206 0.98

4 13 2.5e-05 0.0061 18.8 1.3 1 23 212 234 212 234 0.96

5 13 1.7e-05 0.0042 19.3 0.8 3 23 242 262 240 262 0.96

6 13 0.0034 0.81 12.2 0.3 1 23 268 290 268 290 0.98

7 13 1.7e-05 0.004 19.4 1.0 1 23 296 318 296 318 0.97

8 13 3.2e-06 0.00078 21.6 4.5 1 23 324 346 324 346 0.98

9 13 1.5e-05 0.0037 19.5 1.3 1 23 352 374 352 374 0.98

10 13 2.8e-06 0.00067 21.9 1.7 2 23 384 405 383 405 0.97

11 13 1.8e-06 0.00044 22.4 0.2 1 23 411 433 411 433 0.99

12 13 3e-08 7.3e-06 28.0 1.5 1 23 439 461 439 461 0.99

13 13 1.4e-07 3.3e-05 26.0 3.5 1 23 467 489 467 489 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.081	19	7.8	1.3	1	23	132	154	132	154	0.97
2	13	1.9e-06	0.00046	22.4	0.4	2	23	157	178	156	178	0.97
3	13	0.00019	0.046	16.1	0.1	1	23	184	206	184	206	0.98
4	13	2.5e-05	0.0061	18.8	1.3	1	23	212	234	212	234	0.96
5	13	1.7e-05	0.0042	19.3	0.8	3	23	242	262	240	262	0.96
6	13	0.0034	0.81	12.2	0.3	1	23	268	290	268	290	0.98
7	13	1.7e-05	0.004	19.4	1.0	1	23	296	318	296	318	0.97
8	13	3.2e-06	0.00078	21.6	4.5	1	23	324	346	324	346	0.98
9	13	1.5e-05	0.0037	19.5	1.3	1	23	352	374	352	374	0.98
10	13	2.8e-06	0.00067	21.9	1.7	2	23	384	405	383	405	0.97
11	13	1.8e-06	0.00044	22.4	0.2	1	23	411	433	411	433	0.99
12	13	3e-08	7.3e-06	28.0	1.5	1	23	439	461	439	461	0.99
13	13	1.4e-07	3.3e-05	26.0	3.5	1	23	467	489	467	489	0.99

Sequence Information

Coding Sequence: atggaagaaacGTCAACGATTTtctacgattttaataaaatttgccgTGTTTGTTTAGCAGAAAATAGtgtacaatttaaaattaattcaactgttgttaaaaaaatacaattttgtacATCTGTTCAGctTTCAATTGGTGAAGGACTTCCAGAACAAATTTGTGAACACTGTCATTCATTAATAGACAGTTTCTGTAGTTTCAAAACAACCTGTGAAAAAGCCGATGGAATACTCCGAGAATACCTACAACTTAATCCACAATGTCCCGAACCAAATATTACCACAACGATCAAAGAAGAAGAAACTATTAAAGAAGAAGTACAATACCAGCTACTCGTTCCTGTAACACAAGAACAAGAAGCCGAAGAAATAACACTTGGCGATACAAAATACTCTTGTGATAATTGCGAAGATATATTTCATGATTTTGAATCGTTGGAAAAACATAAAAGCATACATGCTATAGTTTGTAATGTCTGTGATAAAGAATTTAAGTCTGCATTGAGTTTGAAGAGACATCAGAAGGTGCATTTGGAGAATAGTGATTTTATGTGCAATGTTTGTTCGAAAGTGTTAGGAACGGGAGCTGCATTACGGAGACATATGAAAATTCATTCCGATGTCAAGCCACATGCTTGTGACATTTGTAACAAGAGATTTTATGAAGCAGGTGATCTAAGCAAACATCTTAAACGTCACCGTGGTGAAAAAACCCATCTCTGTCCAATCTGTGGAAAGAGTTTCTACGAGAACAATATCCTAACGGTTCATATGCGAACACATACTGGAGaaaaaccgttcaaatgtggTATGTGCATGAAAGCCTTCGCCACCACTACACAGATGGAAGTGCACTGGAAGGTACATACGGGAGAGAAAAACCACATGTGCGATATCTGCGGAGAGGGTTTTAGCGAGAAGTGGTATCTCAAAGTGCATAAACGGAGACATAACGGAGAGAAGCCGTATGAATGTTCGGTGTGTCATAAGAAGTTTACGCATAGTGGAACACTGAGAGTTCATTTACGATTACATACAgGTGAAAAACCATACCCATGTGATCGTTGTGAACTCAGTTTCGTAACCAAAGAAAAACTCCATGCTCACATCCGTAAACACACGGGTGAAAAACCAGTGATGAAAGTCGTATGTTCAATGTGCGGAAAGCAATGTTCAAACTCCTCTGATCTCAAAGTTCATTACCGTTCACATACAGGAGAACgtccattcaaatgtgatataTGTGGTAAATCTTTCCTGGTTTCAGGAAATTTGAATGCACACCGCAGAGTTCATACgggagaaaaaccatttaaatgtaatgTTTGCgataagagatttaaggaaagtTCAAATTTGAAGATACACCTTAGGGTCCATACTGGGGAACGACCATATAAATGTTCAGTTTGTCCGAAAAGTTTTACACAGAGTGGAACGTTATATCATCACATGAAGACTCATTAA
Protein Sequence: MEETSTIFYDFNKICRVCLAENSVQFKINSTVVKKIQFCTSVQLSIGEGLPEQICEHCHSLIDSFCSFKTTCEKADGILREYLQLNPQCPEPNITTTIKEEETIKEEVQYQLLVPVTQEQEAEEITLGDTKYSCDNCEDIFHDFESLEKHKSIHAIVCNVCDKEFKSALSLKRHQKVHLENSDFMCNVCSKVLGTGAALRRHMKIHSDVKPHACDICNKRFYEAGDLSKHLKRHRGEKTHLCPICGKSFYENNILTVHMRTHTGEKPFKCGMCMKAFATTTQMEVHWKVHTGEKNHMCDICGEGFSEKWYLKVHKRRHNGEKPYECSVCHKKFTHSGTLRVHLRLHTGEKPYPCDRCELSFVTKEKLHAHIRKHTGEKPVMKVVCSMCGKQCSNSSDLKVHYRSHTGERPFKCDICGKSFLVSGNLNAHRRVHTGEKPFKCNVCDKRFKESSNLKIHLRVHTGERPYKCSVCPKSFTQSGTLYHHMKTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -