Lhae040752.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_963971575.1
- Location
- OZ020618.1:1111653-1113651[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.22 53 6.4 0.6 1 19 86 103 86 106 0.85 2 15 0.14 33 7.1 0.2 1 19 109 127 109 127 0.96 3 15 0.0042 1 11.8 3.0 1 23 206 228 206 228 0.93 4 15 1.2e-07 2.9e-05 26.1 2.4 1 23 231 253 231 253 0.98 5 15 0.088 21 7.7 3.2 1 23 270 292 270 292 0.90 6 15 8.5e-06 0.002 20.3 0.7 3 23 297 317 295 317 0.97 7 15 0.00093 0.22 13.9 2.4 2 23 336 357 336 357 0.98 8 15 0.0022 0.53 12.7 0.5 3 23 364 385 363 385 0.93 9 15 7e-05 0.017 17.4 0.3 3 23 393 413 391 413 0.95 10 15 2.8e-05 0.0068 18.7 0.0 1 23 419 441 419 441 0.97 11 15 3.5e-06 0.00085 21.5 0.1 1 23 447 469 447 469 0.94 12 15 7e-06 0.0017 20.6 0.2 1 23 475 497 475 497 0.97 13 15 7.7e-06 0.0019 20.5 1.6 1 23 503 525 503 525 0.97 14 15 2.3e-08 5.5e-06 28.4 0.4 1 23 531 553 531 553 0.98 15 15 2.1e-05 0.0051 19.1 9.5 1 23 559 581 559 581 0.98
Sequence Information
- Coding Sequence
- ATGGCGACCAAATTTTATAGTAGATGCAGAGCTTGCTTATCAGAAAATTCAGAAATTCCAATCGAACAAACGCGCGTATTTCATAATAAACAACTGAACATAGCAGAAATTCTGATGGCATGCACTGCAATACAGgtggAAGTAAAAGATAGTTTACCTCAAGAAATTTGTACAGAATGCTTAAATACAGCTGAATTGGCTTATAGTTTCCGTATTAAGTGCGAGGAAAGTGATAAAATATTACGATCAGAATTTTATCCATGCGAAAAATGTCCAGAACTTTTTACGACAGAAGATCTGAACAACCATTTTAATCACGAAAACTACAACTGTCAAGAATGTGATGCaaaatttttaacaaaagaagactTAGAAGAACatgattgtattaaaaaaattaatacaaaacttTTAGAATATGACAAGAAACCAACTAGCTCACTTCGAGCTactagaaaatcaaaaaacgtTACTGAAACATGTGAATCTGTAAAAAACGAATCCGAACCTGAAAATTATTCTGATGTTGAATCTATAAAATCAGAAACGGAACAAAAGCATAAAATACCGAATAACATCCTTAAATATACATCGGAAAAGAATGAACATGGTCTTTATGAATGTATAAGTTGTGATAATACATTCGAgaacttaaaaaatttacacAAACACACAAgaacacataaaaaatttatttgtaaattgtgtaaaaaaagttttaccgTACTTTCTAACTTACGTAGACATCTTCGAACACATCAAGAtgtagagaatgaaattttaCAGAACGAAGATAGTGATAGTGTTTTTAAGTGTATAGCATgttcaaaaacatttaaaaaaagaaaatttttgagtGATCATCTTAAAAATCACAGTGAATTTGGTTGTAAAATTTGTGGGGTTAAGTTTACGTTTGCTACAAATTTGCGTAAGCATCTGCGCGCGCATAACAGACCTAAGGACGAAATACGTGTTTGGAAACAAGGACCAATTGAAAGTAGGACTTGTGATTTATGCTTTAAAGTCTTCAAATATAGACCTAGTATGTTAAAACATCGAAGAAAACAtgaaaatacattgaaaatttgtaaattttgtgatgaaaattttgaaaattctattaaattatataaacacATGGAAGATATGCATGAAcaagagaaaaatattatttgtacacTCTGtggaaagaaattttttaaggAGTGGAATTTGAAAATGCATATGGTAGTACATTCTGGTGTAAAAGCATTTATGTGCGAAATTTGTGGAGTTAGTTTTGCACTTAGTGGAAATTTGgCTGCTCATAAAAGATTACATTTAGGTATTCGTccttataaatgtgaaatatgtGGGCGTGGTTTCACTCAGCAAGCAGCACTACGTTCTCATGAGGCGGGACATTCAAATCGTCGTGATCACGTATGCCCAGAATGTGGCGCCGCCTTTAGTCGCGCAGGCGCAATGCGTAACCATAGAAAAAGACACGAAACCCATAAAAAATTCCCTTGCAACATGTGTGGAAAACGATTTACATTTAGTTCAGAAAGAAAACAACACATGACTATACATACgggtgaaaaaaattatatttgtgatTTTTGCGGAAAGGCTTTTAACAGACCGAGTAATTTGAAAGTACATCGGAGGGTACATACTGGAGAACAACCTCATCGGTGCGAGATATGCGGGAAATGTTTTACGCAAGCTCATTGCTTACGTACACATTTAAATACACATCAGAAACCAGATGATTTGATACAAGttacacaaaatattacaatactgTAA
- Protein Sequence
- MATKFYSRCRACLSENSEIPIEQTRVFHNKQLNIAEILMACTAIQVEVKDSLPQEICTECLNTAELAYSFRIKCEESDKILRSEFYPCEKCPELFTTEDLNNHFNHENYNCQECDAKFLTKEDLEEHDCIKKINTKLLEYDKKPTSSLRATRKSKNVTETCESVKNESEPENYSDVESIKSETEQKHKIPNNILKYTSEKNEHGLYECISCDNTFENLKNLHKHTRTHKKFICKLCKKSFTVLSNLRRHLRTHQDVENEILQNEDSDSVFKCIACSKTFKKRKFLSDHLKNHSEFGCKICGVKFTFATNLRKHLRAHNRPKDEIRVWKQGPIESRTCDLCFKVFKYRPSMLKHRRKHENTLKICKFCDENFENSIKLYKHMEDMHEQEKNIICTLCGKKFFKEWNLKMHMVVHSGVKAFMCEICGVSFALSGNLAAHKRLHLGIRPYKCEICGRGFTQQAALRSHEAGHSNRRDHVCPECGAAFSRAGAMRNHRKRHETHKKFPCNMCGKRFTFSSERKQHMTIHTGEKNYICDFCGKAFNRPSNLKVHRRVHTGEQPHRCEICGKCFTQAHCLRTHLNTHQKPDDLIQVTQNITIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -