Basic Information

Insect: Liopterus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_963971575.1
Location: OZ020611.1:179331817-179333652[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00017 0.04 16.2 3.7 1 23 171 193 171 193 0.97

2 12 7.8e-08 1.9e-05 26.7 1.6 1 23 199 221 199 221 0.98

3 12 5.8e-09 1.4e-06 30.3 0.6 1 23 261 283 261 283 0.98

4 12 1.3e-05 0.0032 19.7 4.2 2 23 303 324 302 324 0.97

5 12 1.3e-06 0.00032 22.9 0.7 1 23 330 352 330 352 0.97

6 12 1.4e-06 0.00035 22.7 1.6 1 23 358 380 358 380 0.98

7 12 4.1e-06 0.00099 21.3 0.4 1 23 386 408 386 408 0.95

8 12 0.00019 0.045 16.1 0.2 3 23 416 436 414 436 0.96

9 12 1.7e-06 0.00042 22.5 2.9 1 23 442 464 442 464 0.98

10 12 8.7e-05 0.021 17.1 0.8 1 23 470 492 470 492 0.99

11 12 2e-06 0.00049 22.3 1.1 1 23 498 520 498 520 0.98

12 12 0.00014 0.034 16.5 2.7 1 23 526 548 526 548 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00017	0.04	16.2	3.7	1	23	171	193	171	193	0.97
2	12	7.8e-08	1.9e-05	26.7	1.6	1	23	199	221	199	221	0.98
3	12	5.8e-09	1.4e-06	30.3	0.6	1	23	261	283	261	283	0.98
4	12	1.3e-05	0.0032	19.7	4.2	2	23	303	324	302	324	0.97
5	12	1.3e-06	0.00032	22.9	0.7	1	23	330	352	330	352	0.97
6	12	1.4e-06	0.00035	22.7	1.6	1	23	358	380	358	380	0.98
7	12	4.1e-06	0.00099	21.3	0.4	1	23	386	408	386	408	0.95
8	12	0.00019	0.045	16.1	0.2	3	23	416	436	414	436	0.96
9	12	1.7e-06	0.00042	22.5	2.9	1	23	442	464	442	464	0.98
10	12	8.7e-05	0.021	17.1	0.8	1	23	470	492	470	492	0.99
11	12	2e-06	0.00049	22.3	1.1	1	23	498	520	498	520	0.98
12	12	0.00014	0.034	16.5	2.7	1	23	526	548	526	548	0.96

Sequence Information

Coding Sequence: atGGAGGAAGCAGCGTTAATTAAGATATGTCGAGCGTGTTTAACAGAAGAAGGTGAAATGCAGTCCGTGTTTGTACCTGATGAGAAAACGGGTTCACACATACATTTGGCTGAAATGATTATGGCATACGCCTCTGTACAGATAACACTGGGAGATGGTTTACCAGAACAAATTTGTTTATCTTGTGCAGCAAAAGTAACCACTACATATATGTTTAAACAGCTTTGTGAAGAATCTGACACAATGCTTCGAGCGAGATTTGGAAAATCTCCACTCCAACATAATTCTCCAACTGTTAAATTGGAGACCCAAGCTATCATAGTTGCTGATCAAGGTAGTATTAATTTAGATCCGGATACCATAAACATAGTGATAAAACCAGAGTTTGATATAGAAAATGATCAGTGCGATATGTTTTATGACAATGATAATGAATTAAATACTGTGGAAGATGATTTTTTGCAAGACGATGATACTGATGACTCGGATTACGACCCAAAAAGATCAGCTTACAAATGTGACGTATGTAAAAAATCATTTGGAAAAATGACTCATTTAAATAAACATCGAGCGCAACATGGTACTATTAAACCATACACATGTGATGTCTGCAATAAAAGTTTTACACGAAGTGATTTGTTGCAACGACATCGATTATCCCATTCAGATGAATTGAAAAAAGAAGATGAAATTGATGAAATAAAACAAGAAAAGGAAGATGATGACGAGGaggaggaggaggaggaagaggaTGATGATGTTGATCCAGAATCTAAATCTTTCAACTGCGCTATATGTCCAAAGATGTTTAGtcgaaaagaaaatttaacagcACATATGCGTACACATCTACGTTCAACAAACTCCACATCAAAATCATCATCAAATAGTCACGATAAAGTGTTAGTGTGTCATGTATGTTCGAAAAAGTTCATGAAACCGAGTCACCTTACGCGCCATCTAAAAATACACGCAGCAGTTAAAGCTCACGTTTGTCAGTTATGTAACAAAGGTTTCGCAAGAAGTGAACAGTTAATAAACCACATGAATGTGCATTCTGGTATAAAACCGCATGTGTGCAGTATTTGTTCGAAGGGTTTTAATCAGATTAGTAACTTGAAAGATCATTTACGTACACATAATGGTGAGAAACCTTTTTTATGTTCAATTTGCGGTAAGGGATTTAATCAGCTCGGTAACTTACGTCAACATACAATTCGCCATAGTGGTATTAAAGCACATTTATGTAGTATCTGCGGGAACGGGTTTGCGAGTAAAGGTGAATTGGGTGCTCATTTACGTAAACATACGGGTGCCAGACCGTTCGTTTGTTCGATTTGCAACCATGGTTTCACAACATCAAGTTCATTAACCAAACACAAACGTATACACTCGGGAGAAAAACCATATGAATGCGAAGtatgtaaaatgaaattttcacgTAGCGGTATTCTTGCACGACACAAACGTACACATACGGGTGAAAAACCATATGTTTGTAAATTCTGTACGAAAGCATTCTCACAGAGTAACGATTTGAGTTCGCATCTTAGAATTCATAcgggagagaaaccatttatttGTGACTGCTGTGGTCAAGCATTTAGACAGAGTTCCGCCTTGAAAACGCATAAAAAGACCCACATGGACAGAAATGCCATCGCAATGATTCAATCTACTTTATTAAACACCATTCAatga
Protein Sequence: MEEAALIKICRACLTEEGEMQSVFVPDEKTGSHIHLAEMIMAYASVQITLGDGLPEQICLSCAAKVTTTYMFKQLCEESDTMLRARFGKSPLQHNSPTVKLETQAIIVADQGSINLDPDTINIVIKPEFDIENDQCDMFYDNDNELNTVEDDFLQDDDTDDSDYDPKRSAYKCDVCKKSFGKMTHLNKHRAQHGTIKPYTCDVCNKSFTRSDLLQRHRLSHSDELKKEDEIDEIKQEKEDDDEEEEEEEEDDDVDPESKSFNCAICPKMFSRKENLTAHMRTHLRSTNSTSKSSSNSHDKVLVCHVCSKKFMKPSHLTRHLKIHAAVKAHVCQLCNKGFARSEQLINHMNVHSGIKPHVCSICSKGFNQISNLKDHLRTHNGEKPFLCSICGKGFNQLGNLRQHTIRHSGIKAHLCSICGNGFASKGELGAHLRKHTGARPFVCSICNHGFTTSSSLTKHKRIHSGEKPYECEVCKMKFSRSGILARHKRTHTGEKPYVCKFCTKAFSQSNDLSSHLRIHTGEKPFICDCCGQAFRQSSALKTHKKTHMDRNAIAMIQSTLLNTIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -