Basic Information

Insect: Liopterus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_963971575.1
Location: OZ020611.1:228917323-228933670[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.1e-06 0.00051 22.2 0.7 1 23 183 205 183 205 0.99

2 12 0.0051 1.2 11.6 0.3 1 23 211 233 211 233 0.96

3 12 8.7e-05 0.021 17.1 4.3 1 23 239 261 239 261 0.97

4 12 0.00015 0.036 16.4 1.4 3 23 275 295 273 295 0.95

5 12 0.00036 0.086 15.2 0.9 2 23 302 323 301 323 0.97

6 12 5.8e-07 0.00014 24.0 1.3 1 23 329 351 329 351 0.99

7 12 9.7e-07 0.00023 23.3 0.2 1 23 357 379 357 379 0.96

8 12 1.1e-05 0.0026 20.0 0.1 1 23 385 407 385 407 0.98

9 12 2.1e-07 5.1e-05 25.4 0.2 1 23 413 435 413 435 0.98

10 12 2.7e-06 0.00064 21.9 2.8 1 23 441 463 441 463 0.97

11 12 2.5e-07 6e-05 25.2 0.2 3 23 471 491 470 491 0.99

12 12 6.1e-07 0.00015 23.9 0.3 1 23 497 519 497 519 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.1e-06	0.00051	22.2	0.7	1	23	183	205	183	205	0.99
2	12	0.0051	1.2	11.6	0.3	1	23	211	233	211	233	0.96
3	12	8.7e-05	0.021	17.1	4.3	1	23	239	261	239	261	0.97
4	12	0.00015	0.036	16.4	1.4	3	23	275	295	273	295	0.95
5	12	0.00036	0.086	15.2	0.9	2	23	302	323	301	323	0.97
6	12	5.8e-07	0.00014	24.0	1.3	1	23	329	351	329	351	0.99
7	12	9.7e-07	0.00023	23.3	0.2	1	23	357	379	357	379	0.96
8	12	1.1e-05	0.0026	20.0	0.1	1	23	385	407	385	407	0.98
9	12	2.1e-07	5.1e-05	25.4	0.2	1	23	413	435	413	435	0.98
10	12	2.7e-06	0.00064	21.9	2.8	1	23	441	463	441	463	0.97
11	12	2.5e-07	6e-05	25.2	0.2	3	23	471	491	470	491	0.99
12	12	6.1e-07	0.00015	23.9	0.3	1	23	497	519	497	519	0.98

Sequence Information

Coding Sequence: atggatttaagtatatatttaacGGCACCATTACAATTAGACAGAATATGCAGAGCTTGTCTATCGGAAAAGGGTGATATGAAGCCCTTATTTGGAGCTTGCTTAGATGAAATGCTTCTGTCTTTCGCTAATATTCAGGTCAGTCAAGGAGATGGCTTACCAAATCTCATGTGCGTTCAATGTATTTTACAGTGCAGTCGAGCATATACTTTTAAACAAATGTGCGAAAAGTCAGATGCTACACTTAAACAGTATATTAGTCCTGAATTTCAAgaacaGTTGACACAAGCTTTACAGGAACAGCAAACTAAAGAAGAATTACAGGAACAGTTGCAATTTAATAATCTTGATGCTGTCGTTGAAATAGATGACAGTATTGCACATGAGTTCGTCACTTATACGACAGAAGAAACAGATGGCTGCGATGAGATGgagGTGAAACCTGAATTATATGAAATGAATGCTATTGAAGCCACAGATGTGCCTGTAGATGATGAAGATGCAATTGCAATGGTTGTaccaaaaatagaattaaataagGATAAATACCAATGTAAAAAATGCAATGAAACATTTCCTTTAAAAGTGGATTTAAAGGTCCATATGATGTCACATCCAAAAGAAAATGATCATATCTGCGGAGTTTGTACAAAAGCCTTTCCCGAAGCTCGAATATTAAAACGTCATCTTAAAATACATCTCGATAAGAAACCACATGAATGCGATGTCTGCCATATGTCATTTGCGGAGAGTTCAAATTTGAGTAAACATAAAAAGAAACATACGGGAGAATTGAGGAATATTAAAGGGAAGCCCCATTTGTGTTCTGTTTGTGGGAGAGCGTTCAAGTGGGCTTCCAGTTTATCCAAACATATGAAATATCATACTGGTCATAAGTTGTTGAGttgtaaattttgtaataaGCAATATGTTGAGGCGAGAAGTCTGAGAATACACTTACGTTCCCATACTGGTGAGAGGCCGTACGTGTGCAATATATGTCAGAAGGGCTTTACGCAGGTCTGCAACCTCGAAAAACATATCAGGGTCCAtactggagagaagccattcctATGCAACATTTGTGGAAAAGGATTCACACAATCAGGCTACGTAGCAATCCATATGCGTACACACACAGGTGAAAGACCGTATGTGTGTCAGACCTGCGGAAAGGGATTTGCTGGTTCGAACACGCTTGCTATCCACCAACGTATCCATACAGGAGAGAAACCGTATCCTTGTAACCTGTGCGGAAAGGCCTTCTCACGACAGGAGACACTCGTTATACACACCCGATCACATACCGGACACAAGCCGCATATCTGCAGTGTTTGCAATAAGGGATTTACAAGCTCCGGACATCTTACTGGACATATGAGAAgtcatactggagagaaaccgcATGGATGTAATATTTGTGGCAAGCGatttgctGGTTCAAGCAGTTTGAAGGTCCATATGAGAgtccattctggagagaaaccatttgtGTGTCGATTTTGTGGTAAAGGTTTTACGCAATCAAGTGCATTAGCAACACATATACTTACACATACTGGACAGAAGATGCCTAAATCACCGAGAATGGAAGCGACAGTGCAGGTTGCTGCAATATTGACCGGAGATTCAGTTCAAACTGTCCAAGTACAGCAAATAACTCCTTTGTAA
Protein Sequence: MDLSIYLTAPLQLDRICRACLSEKGDMKPLFGACLDEMLLSFANIQVSQGDGLPNLMCVQCILQCSRAYTFKQMCEKSDATLKQYISPEFQEQLTQALQEQQTKEELQEQLQFNNLDAVVEIDDSIAHEFVTYTTEETDGCDEMEVKPELYEMNAIEATDVPVDDEDAIAMVVPKIELNKDKYQCKKCNETFPLKVDLKVHMMSHPKENDHICGVCTKAFPEARILKRHLKIHLDKKPHECDVCHMSFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLSCKFCNKQYVEARSLRIHLRSHTGERPYVCNICQKGFTQVCNLEKHIRVHTGEKPFLCNICGKGFTQSGYVAIHMRTHTGERPYVCQTCGKGFAGSNTLAIHQRIHTGEKPYPCNLCGKAFSRQETLVIHTRSHTGHKPHICSVCNKGFTSSGHLTGHMRSHTGEKPHGCNICGKRFAGSSSLKVHMRVHSGEKPFVCRFCGKGFTQSSALATHILTHTGQKMPKSPRMEATVQVAAILTGDSVQTVQVQQITPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01275584;
90% Identity: -
80% Identity: -