Basic Information

Insect: Liopterus haemorrhoidalis
Gene Symbol: su(Hw)
Assembly: GCA_963971575.1
Location: OZ020621.1:180023-184012[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.4e-05 0.0034 19.6 1.3 2 21 104 123 104 124 0.94

2 13 0.0035 0.84 12.1 0.2 1 23 159 182 159 182 0.97

3 13 6.2e-06 0.0015 20.7 0.9 2 23 187 208 186 208 0.97

4 13 1.2e-06 0.00029 23.0 1.2 1 20 213 232 213 234 0.95

5 13 6.1e-07 0.00015 23.9 0.5 1 23 245 267 245 267 0.98

6 13 9.5e-06 0.0023 20.2 0.5 1 23 277 299 277 299 0.98

7 13 1.7e-06 0.0004 22.5 0.8 1 23 305 327 305 327 0.99

8 13 1.3e-05 0.0031 19.8 1.4 1 23 333 355 333 355 0.99

9 13 1e-05 0.0024 20.1 3.5 1 23 361 383 361 383 0.95

10 13 1.4e-05 0.0033 19.7 2.3 1 23 389 412 389 412 0.94

11 13 1.8e-06 0.00045 22.4 1.0 1 23 418 440 418 440 0.97

12 13 6.5e-06 0.0016 20.7 4.5 1 23 446 468 446 468 0.98

13 13 1.6e-06 0.00039 22.6 1.9 2 23 475 497 475 497 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.4e-05	0.0034	19.6	1.3	2	21	104	123	104	124	0.94
2	13	0.0035	0.84	12.1	0.2	1	23	159	182	159	182	0.97
3	13	6.2e-06	0.0015	20.7	0.9	2	23	187	208	186	208	0.97
4	13	1.2e-06	0.00029	23.0	1.2	1	20	213	232	213	234	0.95
5	13	6.1e-07	0.00015	23.9	0.5	1	23	245	267	245	267	0.98
6	13	9.5e-06	0.0023	20.2	0.5	1	23	277	299	277	299	0.98
7	13	1.7e-06	0.0004	22.5	0.8	1	23	305	327	305	327	0.99
8	13	1.3e-05	0.0031	19.8	1.4	1	23	333	355	333	355	0.99
9	13	1e-05	0.0024	20.1	3.5	1	23	361	383	361	383	0.95
10	13	1.4e-05	0.0033	19.7	2.3	1	23	389	412	389	412	0.94
11	13	1.8e-06	0.00045	22.4	1.0	1	23	418	440	418	440	0.97
12	13	6.5e-06	0.0016	20.7	4.5	1	23	446	468	446	468	0.98
13	13	1.6e-06	0.00039	22.6	1.9	2	23	475	497	475	497	0.96

Sequence Information

Coding Sequence: ATGTCGGAAGCAAGTGAAGGTTTGGTGAAATCAGATCCAGAAGCTCAAGATATGAAGGATACAACTATTTTAACCAACATTCCAATGGTAGATACAATAGATTTACACAATGCTGTTGTTATTATGCCTGAAAATTCCGACGGAAACCTTTCCATAAACACCATTCAAGATAGTAATGTTGTTGTGCTTGCAAGTATGACGAGTAATGGAGAACTTATCACTCCGGACCTGCATACAACGATAGAACCAGAACCAAGCACTTCGGAAATACAAGAACCAGAGGTTCCGGAAGAACCAAGAGATCCTAATACTTGCAGTCATTGCAATAAAGTCTTTAGATCGCAAACTGGTCTTAAAAGACATCTATTGCTGTGTCAACCAGAGCCTGATGATGGCGACTTGGATGACCCACTTGCGTTTGAAATTTGCCACTGCTGCGGTGAACCAATTGATACTGCGCATAAGGTGGGCGATTTCCCATGTCAAAAATGCGAGAAGCTTTTCATAAGTGAACAAGCAATGGATCGTCATTTACGTATCGTTCATTCGGACGGTCTTCAGTGTCCAGACTGCGGTCACCAATCCACATCACGCGATCTTCTCCAAAAGCACATGATCACCCATCTTGAGAAACCGTTCAGTTGTGAACGTTGTAACAAGGTGTTCAGTCGAAAATATCATCTTGAACGGCATATCGCTCAGACTGGTTGCGATGGAAAACCAAGACCGACTTTTCAGTGTCAGGTTTGTGAGAAGGAATTTGCTAGAAGAGATAATTTGAGGGAACATTTGAGAGGACACGCTGGACAGACGAAAAGGAAGAAGGTGTTTCCTTGTCCGGAGTGTAAGAAGGAGTTTCATGGATCTGCGTTGCTTCAGATTCACTTACGCACACATACAGGAGAGAGACCGTATCAGTGCTCGATGTGCCCTAAAAGATTCCCCTCGAGTGGGGCCATGAAGAAACATACTCGGATGCACACAGgtGAGCGTCCATACGAGTGTCAAGAATGTCACGCTCGTTTCGCAGCCAAAGAAACTCTTAATCGTCATCTCCGAACCCATACAGGAAACAAACCCCATTCGTGTCAATTCTGCGGTAAGAGTTTCATCCAAGCATCCCAGCTACGAGCTCACATTTTCCACCATACTGGTGAAAACGCTTTCACTTGCGATCATTGCGGTAAAGCATTCAATAGACGCAGTCGTCTTGTAACACACGTTAAGTTCGTACATGAAGGCGCAACTCCATTCGAATGTGATACTTGCAAAAAAACATTCGTACGCAAAGAAGATTTAGCACGACACACCATGTTACATAGTGGTATTAAACCGCATGAATGCACAGTTTGTCATAAGAGTTTCGCGATGAAAAGTTCGTTAAAAATTCATATGTATACGCATCGTAAAGAACAACCTCGTAGCTGCGATGAATGTGGAAGAGCTTTTATTCGTCaggattgtttgttacgtcacATGAGATCGAAACATCGAGATATGTTAGAAGATATTTTAGCTGGAGCTGAAAAGAAGAGGCTACAACAACAACTATTAGCTGCTGCTTCGGAAGCTGTTTCCGAAAACAAACCAAGTATTGCAGCGACTGGAGTTTGGTCGGAATTAACTTTAACGGATTCTATTCGTGAATTGTTGACTCTGTTGGTTGACGAAGCTACTTTACGAGCCTTCGGATGGCCTGATACTCCTGTTGATAAGTTATTAGATTCTGTTATTCGACGCTGTGGTCATAAACCAGCTTCCGAAGATGATTTTGATTATATCGGGCGTTTGAGAGAGAACGCTAagttactttttacagtagttATTGATGATTCCGCTGTTAAAAGTTTACTTAATAATCAAACGGTGGATGAAGTTATTTTGCATGTCTTACGTTTAGCTAAGGCagaataa
Protein Sequence: MSEASEGLVKSDPEAQDMKDTTILTNIPMVDTIDLHNAVVIMPENSDGNLSINTIQDSNVVVLASMTSNGELITPDLHTTIEPEPSTSEIQEPEVPEEPRDPNTCSHCNKVFRSQTGLKRHLLLCQPEPDDGDLDDPLAFEICHCCGEPIDTAHKVGDFPCQKCEKLFISEQAMDRHLRIVHSDGLQCPDCGHQSTSRDLLQKHMITHLEKPFSCERCNKVFSRKYHLERHIAQTGCDGKPRPTFQCQVCEKEFARRDNLREHLRGHAGQTKRKKVFPCPECKKEFHGSALLQIHLRTHTGERPYQCSMCPKRFPSSGAMKKHTRMHTGERPYECQECHARFAAKETLNRHLRTHTGNKPHSCQFCGKSFIQASQLRAHIFHHTGENAFTCDHCGKAFNRRSRLVTHVKFVHEGATPFECDTCKKTFVRKEDLARHTMLHSGIKPHECTVCHKSFAMKSSLKIHMYTHRKEQPRSCDECGRAFIRQDCLLRHMRSKHRDMLEDILAGAEKKRLQQQLLAAASEAVSENKPSIAATGVWSELTLTDSIRELLTLLVDEATLRAFGWPDTPVDKLLDSVIRRCGHKPASEDDFDYIGRLRENAKLLFTVVIDDSAVKSLLNNQTVDEVILHVLRLAKAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -