Lhae014141.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Liopterus haemorrhoidalis
Gene Symbol
-
Assembly
GCA_963971575.1
Location
OZ020611.1:228952613-228961167[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00016 0.038 16.3 4.7 1 23 159 181 159 181 0.98
2 16 2.2e-05 0.0053 19.0 4.3 1 23 186 208 186 208 0.98
3 16 2.5e-05 0.006 18.8 4.3 1 23 214 236 214 236 0.97
4 16 0.00015 0.036 16.4 1.5 1 21 242 262 242 263 0.94
5 16 9.3e-07 0.00022 23.3 0.2 1 23 270 292 270 292 0.97
6 16 0.0077 1.9 11.0 0.5 1 23 480 502 480 502 0.96
7 16 9.4e-06 0.0023 20.2 7.3 1 23 508 530 508 530 0.96
8 16 1.5e-05 0.0036 19.6 5.0 1 23 536 558 536 558 0.97
9 16 0.00021 0.05 16.0 1.0 1 23 564 587 564 587 0.95
10 16 0.012 2.8 10.5 1.1 1 23 599 621 599 621 0.98
11 16 1.1e-06 0.00027 23.1 4.2 1 23 627 649 627 649 0.98
12 16 1.9e-06 0.00047 22.3 0.5 1 23 656 678 656 678 0.96
13 16 2.5e-06 0.0006 22.0 1.2 1 23 684 706 684 706 0.98
14 16 3.7e-07 8.9e-05 24.6 0.9 3 23 714 734 712 734 0.96
15 16 1.8e-05 0.0043 19.3 0.1 1 23 740 762 740 762 0.99
16 16 0.035 8.4 8.9 0.5 1 23 767 790 767 790 0.96

Sequence Information

Coding Sequence
atggaTAACTGTGAATATGATTTTAACCGCATATGTCGTGCGTGTAAAAGTGAATCGGGTGATTTGTGTTCAGTGTTCAATAGGACCGATCCAACAGGACATAATGCCCGACTTGACGAGATGCTGATGGCGTGTGCCTCAGTACAGGTTAATAGCAACGATGGATTACCGGGCTTTATCTGTCAGAAATGCGTCAATTTGCTCAAGAGCGCATTTGAATTCAAACGACAGTGTGAAACCACCGATGTTTCCTTACGCGAATATATCAAATCTAAAGGAATTAAACAAGAACAATCAACACAAAACAATGAACAAGAACTACAGAACCAGCTGTTGGATTTTAGTGCAATGTACAATGAGATCTCGGGCAAAGTCACTGAAGCCGGAGAAATTGTTAAAGTCGAAAATGATTTCAACaatacagaaaatagcaaaaggGATTACATTGAATTTATTGACAACGATAAAGTAATCTTTACTTGCAATACATGTTCAAAATGTTTCTACACCCTCGAAGGCTTAAAAAGCCACAAAAGAATTCATACGGGAGAAATGTACAAATGCAATATTTGTAGTAAAGAGTACACCCGTATGAACCACCTACAACGTCATATGACTCAACATGGTCGAAGACGTGTACACATTTGCAAAATATGCAACAAAACCCTTACGAGACTTGAACATTTAAAACGTCACTTAATAACCCACATGAAAAACAAACCAttccaatgtacattatgtaaACGAGGATTTAACCGTTCTGAACATCTAATGAATCACGCAAAACGTTGTAAAGGAGACAAGATCTATGCTTGCGAAGTGTGTAATAAAGGCTTTACAAGAACAGACAGTTTAGAAGTACACATGAGACTTCATGATAACAAAGCACCAATCCTTCCTACAATCGAAACTTTAGATAATATCCACGAACACTATATTGAGGTAGATGATTATTCTGGTAAATCTGAATCTGAACATTCCGATAATGACAACTTTTCCGATCATGATGATGGAACCGAACTTATGGATGATCATCGTGCtggtgatgatgatgataatgacgATAATCAAGACTGTTTTGAACCGCAAGTAGACATTCTTGAAAACGCAGAAGATGCTGTTAAAACCGAACCACCAGCTGAAGGCAGTTCTACGGAAAATGAAAATACAGAACCTGGAGAAGTGGTTGAACAGTTAGTTGAAAAGGAAAGTAGTGATATAGAAAATTTCGAAGATGAAAAAGATAATGATAGTGATTCAACGCACAGCGAGTACTTACCAGCTCGTGTAGCGAAAAAAACAGGTAAACGTGGAAGAGGTAGACCTAGAAAATATCCTAtaaaagaaaaagtaaaaaaagaacGTAAAGAAAGAGTTCCGAGAGAAAAACCAATTAAACAAGAATTAGTAGAAGACATAAAAGAAGAACCAGGGGAATATCCTTGCCTCGTTTGTAACAAAGTCCTCTCAACACAAATCGGCTTAGAAATTCATTGCCGAAAACATACAGGTCTTAAACTACATAACTGTAAAGTTTGCAACAAGAAATTTACCCGTTCAAATCATCTTAAACGTCACATGACAATTCATTCTGATAACAAACCATACTGTTGCACGATCTGCCCTAAAACATTCAATCGTCGAGACCATATGGCACAACATATGAAACTTCATACAGCATCAAAAGAATTTGAATGTGAAATATGTAAACGTCCATTTGCTCGAATTGAACATCTCCTTAAACATAAAGCTTCGAAACATAACATCGGAGTTAAGATAATGAATGAGAAGAAATATAAATGTACGGTTTGTATGAAAGGTTTTACGACGGAGAAATATCGTGATGTTCATATGAGAGGACATAATGGGGAGAAGAAATTCCAATGCAAGGTTTGTGAGAAGACATTTATATCAAAATCACATCTTACAGAACATATGAAATTCCATAATGACCATTCGAAGAAATTCCTATGCTCGGAATGTGGACAAAGATTTATTAGGAATGATTATTTGGTTATTCACATGAGAAGACATCGAGGAGAGAAACCGTTTAAATGCAAATATTGTGGCAAAGgttttccTCGTACTACTGATCTGACAGTGCATGAAAGATACCATACAGGAGAGAAGACTCATCTTTGCACGATATGTGGTAGAGGTTTTGGAAGggCATACAATCTGACGGTGCATATGCGTACACATACTGGAGAGAAGCCGTATCAATGTACGTATTGCGACGCGGCCTTCGCCCAGGGCAACGACCTCAAGGCGCATGTGCGTAGGCACACGGGTGAGAGATTCCAGTGCGAGATCTGTACAGAGAGCTTCCTTATGGGATACCTGCTCACGCAGCATAAGAGGAGTGTTCACGGCCTACAGGTACAATCGAATATTCGTCGTCTGCAGCGATTCCCGCCACCGCCTCCGCCAGACCAGCAACTTATGGAACAGTCACAGCCGCTTGAGTTGGTACCCCATGTGACGATGCCTTTGGTATCACAGGTACCGACCCTAGCCAATGTGGTACCGCTTATACCATCTGTGCCGCAAGTATCGGTCCCAGTAGCTATTCCACAGGTGCAACCAATCGTCTCTATGCCACAACAACAGACTTGTTGA
Protein Sequence
MDNCEYDFNRICRACKSESGDLCSVFNRTDPTGHNARLDEMLMACASVQVNSNDGLPGFICQKCVNLLKSAFEFKRQCETTDVSLREYIKSKGIKQEQSTQNNEQELQNQLLDFSAMYNEISGKVTEAGEIVKVENDFNNTENSKRDYIEFIDNDKVIFTCNTCSKCFYTLEGLKSHKRIHTGEMYKCNICSKEYTRMNHLQRHMTQHGRRRVHICKICNKTLTRLEHLKRHLITHMKNKPFQCTLCKRGFNRSEHLMNHAKRCKGDKIYACEVCNKGFTRTDSLEVHMRLHDNKAPILPTIETLDNIHEHYIEVDDYSGKSESEHSDNDNFSDHDDGTELMDDHRAGDDDDNDDNQDCFEPQVDILENAEDAVKTEPPAEGSSTENENTEPGEVVEQLVEKESSDIENFEDEKDNDSDSTHSEYLPARVAKKTGKRGRGRPRKYPIKEKVKKERKERVPREKPIKQELVEDIKEEPGEYPCLVCNKVLSTQIGLEIHCRKHTGLKLHNCKVCNKKFTRSNHLKRHMTIHSDNKPYCCTICPKTFNRRDHMAQHMKLHTASKEFECEICKRPFARIEHLLKHKASKHNIGVKIMNEKKYKCTVCMKGFTTEKYRDVHMRGHNGEKKFQCKVCEKTFISKSHLTEHMKFHNDHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCEICTESFLMGYLLTQHKRSVHGLQVQSNIRRLQRFPPPPPPDQQLMEQSQPLELVPHVTMPLVSQVPTLANVVPLIPSVPQVSVPVAIPQVQPIVSMPQQQTC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-