Basic Information

Insect: Liopterus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_963971575.1
Location: OZ020626.1:1839680-1857101[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 1.7 4e+02 3.7 5.3 2 23 68 86 67 86 0.94

2 19 3.9e-07 9.3e-05 24.5 1.6 1 23 92 114 92 114 0.95

3 19 4.1e-08 9.9e-06 27.6 0.3 1 23 120 142 120 142 0.98

4 19 9.4e-06 0.0023 20.2 6.5 1 23 148 170 148 170 0.99

5 19 0.00049 0.12 14.8 0.4 3 23 206 227 204 227 0.95

6 19 3e-07 7.3e-05 24.9 2.2 1 23 284 306 284 306 0.97

7 19 0.0006 0.14 14.5 5.3 1 23 312 334 312 334 0.98

8 19 0.00086 0.21 14.0 2.7 1 21 340 360 340 361 0.94

9 19 0.011 2.8 10.5 0.6 1 23 368 391 368 391 0.96

10 19 0.00066 0.16 14.4 7.4 1 23 827 849 827 849 0.99

11 19 2.4e-06 0.00058 22.1 1.3 1 23 855 877 855 877 0.98

12 19 0.00012 0.028 16.7 1.3 1 23 883 905 883 905 0.98

13 19 3.4e-05 0.0083 18.4 0.2 2 23 912 933 911 933 0.98

14 19 2.6e-05 0.0063 18.8 0.4 1 23 939 961 939 961 0.98

15 19 0.52 1.2e+02 5.3 0.2 1 23 967 989 967 989 0.85

16 19 1.3e-05 0.0032 19.7 0.3 1 23 995 1017 995 1017 0.98

17 19 0.00088 0.21 14.0 2.1 1 23 1023 1045 1023 1045 0.97

18 19 1.4e-05 0.0033 19.7 0.2 1 23 1051 1073 1051 1073 0.98

19 19 0.035 8.5 8.9 11.5 1 23 1079 1101 1079 1102 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	1.7	4e+02	3.7	5.3	2	23	68	86	67	86	0.94
2	19	3.9e-07	9.3e-05	24.5	1.6	1	23	92	114	92	114	0.95
3	19	4.1e-08	9.9e-06	27.6	0.3	1	23	120	142	120	142	0.98
4	19	9.4e-06	0.0023	20.2	6.5	1	23	148	170	148	170	0.99
5	19	0.00049	0.12	14.8	0.4	3	23	206	227	204	227	0.95
6	19	3e-07	7.3e-05	24.9	2.2	1	23	284	306	284	306	0.97
7	19	0.0006	0.14	14.5	5.3	1	23	312	334	312	334	0.98
8	19	0.00086	0.21	14.0	2.7	1	21	340	360	340	361	0.94
9	19	0.011	2.8	10.5	0.6	1	23	368	391	368	391	0.96
10	19	0.00066	0.16	14.4	7.4	1	23	827	849	827	849	0.99
11	19	2.4e-06	0.00058	22.1	1.3	1	23	855	877	855	877	0.98
12	19	0.00012	0.028	16.7	1.3	1	23	883	905	883	905	0.98
13	19	3.4e-05	0.0083	18.4	0.2	2	23	912	933	911	933	0.98
14	19	2.6e-05	0.0063	18.8	0.4	1	23	939	961	939	961	0.98
15	19	0.52	1.2e+02	5.3	0.2	1	23	967	989	967	989	0.85
16	19	1.3e-05	0.0032	19.7	0.3	1	23	995	1017	995	1017	0.98
17	19	0.00088	0.21	14.0	2.1	1	23	1023	1045	1023	1045	0.97
18	19	1.4e-05	0.0033	19.7	0.2	1	23	1051	1073	1051	1073	0.98
19	19	0.035	8.5	8.9	11.5	1	23	1079	1101	1079	1102	0.95

Sequence Information

Coding Sequence: ATGGAAGACACAAATGACCTTGATAGTGATACTAGAACAACTACGAATCTACCAGAAGAGATCAACATTAAGACCGAATACGTAGATATCAGTGAAGAAGAAGAGGAACTGAACACcgcaaataacacatttttagATGATATCACTGAAAATTCAACAAATACTAATAATACTTCCACCAAAACAAGTAAGAAGCGACAAAAATGCGAAATATGTCAAAAAGAATGCGTCCATCTTAGTACCCATATGCGCACGCATACTTCTGAAAGACCCTTTCTCTGTGACATTTGTAACAAAACATTTACAACAAATTCACAATTAAAAGTCCACAAACGTATCCATACAGGAATAAAACCCTATACCTGCGATCTATGTGGAAAAACTTTTGCAGATCTTAGCAATTTGAGACGTCATCAAATTATACATAAAGGTGTGAAACCATATAAATGTCAGCACTGTAATATGTCATTTAGCCAACATAGTAGTTTAATACGACATAAAAGGATTCACACTCGAGAAAAACTTTTAGAGCATGAACAAAGTGGGAAAAGATTTCGAGTGAAACTAGAACATCTTGCTGATAATAGAAAGCATTCAATTGTTTTACCGTTTGGTTGTGGGTTGTGTGAGAAATCGTTCCCGTTGAAATATAGTCTTACGAGACATTTACAGCAAGTACATAAAGatGAAATAACTGAGGataacaaaattgaaaaatgcgaATCTTGtcaaaaagaatttatttatcTCATCAAACATTTATGTACGCAAACACCTGAATTACGTGAAAATTGCAACAAACCTGTTAAAACATCTCCCAAAGAATCATCCCATACGGAAATCAAACCCCATTCCTGCGACATTTGTGGTAAATCCTTTGCCAATTATAGTAATTTTAGACGACATCAAATTATGCATCAAGGTATACGGCTGCACAAATGTCAGCATTGTAAGAAGCCATTTACTGAACGTAGTACAATGGTTCTTCATCAAAGAATTCATAGTGAAGATAAGCCTTTTAGTTGTCAGCACTGCGAggaaaaattttatagaaaatcaCAATTagttattcacaaaaaaaaatgtaaaaatggttTATCATATGACTGTGGAAAATGTGAAAAATCGTTCCTGTTAAAAAATGGACTTACGAGACATTTATTAAAAGTCCATAATGtACGAGCTGATGATAGTTCTAAAGCAGTTGATAGTGAGTTGTTTCACCTTATCAAATCAGAAGAACAGTCAGAGTCTGAGAATTGTGAACCTCCTCTGGAAGATATCGAGGAGATTTATCTTACAgttagtaatataaaagaagaaCCTGAAGATATCGAGCCATTCCAGGAACTCACAAGTGACGAGACCAGTTTGGACAGCGTTGCCACATTCTCTACAAGTGCGCATTCCAACACAGATGTGGCAACAGGGGATATTCACACTCTTCCATACGATAATAGCCGTCCTACAGATGGAGTGCTAAGCACGATTTTATTGTGTTTTGGAGTATGGTTGGTCTTAGAATCCAATGATATATATGGAAAACATAGTATTTTATTAAGAACTGTCCGAAATTTAGAACTACTTCTTGAACAACCAGATAATCttagttttaacaatacttTACTCGACCCATTACAGAAGGAATTTCAATGTTGTGGAATTTATGATTGGAAAGATTATTGGAAGCCATTAACTAAAGTTTGGATGTCTGATATTTTGCCTCTTCCAAAATCTTGTTGTGTAGATCCAGAATCTAATTGTAAACCAAATACGGAACATCATAGGCAAAATGGTTGTTTAGGGAAATTGGTGGAGTTTACTATTGGATTTTTTAGTTCTTTTGGTGTTATTACTTTTAATGTTGCTATTAGTTGTTATATACTTATGGGTTTGGTTTTCCCAGAGCTAGACGAACATGGTATGATATGTGTAAAATGCTGCGTAAATTTAGACGATGCTTATAGATTTCGAGATCaatgtttgaaaaataaacagttGATTATTATTCGTATGTCACAATTGAGATCGACCACTAAAATTGAATCAAATGAGTTGGATTTAGTCAAGTATGTTCGAAATGATTCAGAACATCTTCACGAGGAAAAAGAAGAACTTCAATCGGAAGATGGACACGAGTTCGAGACAGAGATTGAACCATTCCAAGATAGTAATGATAGTAACATTccgttaataattaataatttaaaagtggAACTTCAAGAACATGAAAACGCAGAAGTTCCAGTAATACCTGAAGAGATTCCTTTTCAAGTTACCTCAGGAAATAAATGCGAACAGGACAATAGTAGCAGTGCTATGCTAAAAGAagaatttattatcaaatatgaAGAGAGTGAAAATATTCACTTTGGAGATAATAATCGGAACACCACAGTTTATAATGatcCATCGCTtgataaaacaaacaaaacccTTCCAAAACCAAGTCGTATAAAACCAGAAACTCAAAAAATCTTCAAatgtgatgattgtgaaaaaatttatcACAAACACTCTCATTTAAAAGAGCATCAAAGAATCCACACAGGAGTCCGaccttttaaatgtgatcaatgcgATAAAGCATTTGCCCAAAGTTCAACATTAGTAAAACACAAAACAACCCATAGCGCTGAAAAACCATTCATCTGTGAGATTTGccataaatcattttcactAATGGGTACTTTAGTAGCCCATAAAAGGAGACATACAGATAACAGACCGGTAAAATGCGACCAATGTGGAAAAGGATTTTTGGATAATTCTGATTTAATAAGACATACAAGGATTCACACTGGGGAGAGGCCATATTCTTGTGATTTGTGTGGGAAAGCGTATAAGCAAATGGCTGATTTAATGAGACATAAACTACGGCATTCTGGAGTCAAACCTTTCATTTGCGATCAATGTGGTAAAGCATATCTTACCGGGTTCGAACTTGGGATACATAAAAGAGaccattctggagaaaaacctttTATTTGTGATATTTGTGGTAAAGCATTCCCTTCTAAAGGTAGATTGGACCAACACAAAAGAACACACACAAGTGAAAAAACGTTTGCTTGCGATGAATGCGACGTAGTTTGTTCGGCCAAATCCCATCTGGTGAAACACAAGCGATTACACACGGGAATAAAACCGTTCATCTGTGAGGTGTGTGGTAAAGCATTTGCTGTTAGGAACACGTTAAAGATGCACCGAAGAATCCACACGGGGGAGAGACCACACGAGTGCCATCTGTGTGACAAAGCCTTCGTTTGTAGCTCACATCTACTAAGACATAAAAGAAAACACCATCCAGACCTACTATTATGTCAAAATGTACATAtgtaa
Protein Sequence: MEDTNDLDSDTRTTTNLPEEINIKTEYVDISEEEEELNTANNTFLDDITENSTNTNNTSTKTSKKRQKCEICQKECVHLSTHMRTHTSERPFLCDICNKTFTTNSQLKVHKRIHTGIKPYTCDLCGKTFADLSNLRRHQIIHKGVKPYKCQHCNMSFSQHSSLIRHKRIHTREKLLEHEQSGKRFRVKLEHLADNRKHSIVLPFGCGLCEKSFPLKYSLTRHLQQVHKDEITEDNKIEKCESCQKEFIYLIKHLCTQTPELRENCNKPVKTSPKESSHTEIKPHSCDICGKSFANYSNFRRHQIMHQGIRLHKCQHCKKPFTERSTMVLHQRIHSEDKPFSCQHCEEKFYRKSQLVIHKKKCKNGLSYDCGKCEKSFLLKNGLTRHLLKVHNVRADDSSKAVDSELFHLIKSEEQSESENCEPPLEDIEEIYLTVSNIKEEPEDIEPFQELTSDETSLDSVATFSTSAHSNTDVATGDIHTLPYDNSRPTDGVLSTILLCFGVWLVLESNDIYGKHSILLRTVRNLELLLEQPDNLSFNNTLLDPLQKEFQCCGIYDWKDYWKPLTKVWMSDILPLPKSCCVDPESNCKPNTEHHRQNGCLGKLVEFTIGFFSSFGVITFNVAISCYILMGLVFPELDEHGMICVKCCVNLDDAYRFRDQCLKNKQLIIIRMSQLRSTTKIESNELDLVKYVRNDSEHLHEEKEELQSEDGHEFETEIEPFQDSNDSNIPLIINNLKVELQEHENAEVPVIPEEIPFQVTSGNKCEQDNSSSAMLKEEFIIKYEESENIHFGDNNRNTTVYNDPSLDKTNKTLPKPSRIKPETQKIFKCDDCEKIYHKHSHLKEHQRIHTGVRPFKCDQCDKAFAQSSTLVKHKTTHSAEKPFICEICHKSFSLMGTLVAHKRRHTDNRPVKCDQCGKGFLDNSDLIRHTRIHTGERPYSCDLCGKAYKQMADLMRHKLRHSGVKPFICDQCGKAYLTGFELGIHKRDHSGEKPFICDICGKAFPSKGRLDQHKRTHTSEKTFACDECDVVCSAKSHLVKHKRLHTGIKPFICEVCGKAFAVRNTLKMHRRIHTGERPHECHLCDKAFVCSSHLLRHKRKHHPDLLLCQNVHM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -