Basic Information

Insect: Liopterus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_963971575.1
Location: OZ020611.1:231814842-231823588[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.9e-06 0.00095 21.4 0.8 1 23 175 197 175 197 0.98

2 12 4.5e-06 0.0011 21.2 2.2 1 23 203 225 203 225 0.97

3 12 3.3e-08 7.9e-06 27.9 1.9 3 23 233 253 231 253 0.96

4 12 5e-07 0.00012 24.2 0.7 1 23 259 281 259 281 0.98

5 12 1.4e-06 0.00033 22.8 0.6 1 23 287 309 287 309 0.98

6 12 1.4e-05 0.0035 19.6 0.2 1 23 315 337 315 337 0.97

7 12 1.2e-06 0.00029 23.0 1.2 1 23 343 365 343 365 0.97

8 12 1.7e-05 0.004 19.4 0.1 1 23 371 393 371 393 0.98

9 12 4e-06 0.00096 21.4 3.6 1 23 399 421 399 421 0.98

10 12 3.6e-07 8.6e-05 24.7 1.6 1 23 427 449 427 449 0.99

11 12 7.3e-06 0.0018 20.5 1.2 1 23 455 477 455 477 0.97

12 12 1.2e-06 0.00028 23.1 0.6 1 23 483 505 483 505 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.9e-06	0.00095	21.4	0.8	1	23	175	197	175	197	0.98
2	12	4.5e-06	0.0011	21.2	2.2	1	23	203	225	203	225	0.97
3	12	3.3e-08	7.9e-06	27.9	1.9	3	23	233	253	231	253	0.96
4	12	5e-07	0.00012	24.2	0.7	1	23	259	281	259	281	0.98
5	12	1.4e-06	0.00033	22.8	0.6	1	23	287	309	287	309	0.98
6	12	1.4e-05	0.0035	19.6	0.2	1	23	315	337	315	337	0.97
7	12	1.2e-06	0.00029	23.0	1.2	1	23	343	365	343	365	0.97
8	12	1.7e-05	0.004	19.4	0.1	1	23	371	393	371	393	0.98
9	12	4e-06	0.00096	21.4	3.6	1	23	399	421	399	421	0.98
10	12	3.6e-07	8.6e-05	24.7	1.6	1	23	427	449	427	449	0.99
11	12	7.3e-06	0.0018	20.5	1.2	1	23	455	477	455	477	0.97
12	12	1.2e-06	0.00028	23.1	0.6	1	23	483	505	483	505	0.99

Sequence Information

Coding Sequence: ATGGTGtttgatataaacaattttaatagtatacaaataaacaaaatatgtagAACTTGTTTAACAAGTGAAGGAGATATgtcttctatttttaatttagatgaaACATTTTCTATTAAATTGTATGACATGTTATTAGCTTGTACACCGATTCagATTTTAGAAAATGATGGTCTTCCAGTCCAAGTTTGTACACAGTGTGTTGATTATTTGACAAGAGCATATACCTTTCGGCAACTTTGTGAACGATCAGATTTTCAGTTACGACAgtatataaacaaacaacaaGATCATATAGCGGAAAGTTTagcacaaaatatatttaatgaaaatgattCTTCgttaatagaacaaaataattatgaagatttaGATAGCTTTAGTAAAGATTCACACCCCAAACAAAGTGtaagaaaaactagaaaaacaaagactgattttttaaatgaaattgatGAAAATAGTAGCGAAAATTCGCGAGATTTTGAGGAAAATTTTGAAGATGATACTAAACAGCCTATTTATCCCTGTCCAGAATGTACATTGTGTTTCACAACTGCCGAAGATCTAAAAGTCCATAAACAAAGCCATCCAAGAAAAGTTCAACATGTATGTAAAATTTGTAGGCAACAATTTGCAAGCTCTAGTTCCTTATCAAGGCATAtgaagATTCATGCAGGCATAAAACCACACTTATGTTCAGAATGCGGCAAGGGATTCACTCGATCAGATGATTTGACACAGCACATGCGCACACACAGCGGAGAACGTCCTTACTCTTGTTACGTGTGTCAGAAAGCCTTTACGCAGTCCTCGCAACTGCAAGAACATCTGCGCGCGCACGCAGATCAAAAGAGCTTCGTTTGTACGACATGCGGCAAAGCGTTTTCCCGATACAATAGTCTGAGTGGACATATGAAAATTCATACAGGAGGAAAGAGCCATATTTGTGGAGTTTGCGGAAAAGGATTGTCGAGCAGTGGAGCTTTAAACCTTCATATGAAAACTCATACTGGTCAGAAGGACCATATCTGCAACCTATGCGGGAAGGCTTTCGCGTATCCCGGTCACCTCACCATCCACACCCGAATGCATACGGGAGAGAAGCCCTACATCTGCGAGATCTGCGGCAAGGGATTCCCGGACGCCTCCCGACGCCGGGTACATCAACGCTCTCATAGCGGCGAGAAACCGTACGTCTGTAGTGTGTGTCATAGGGGATGCGTTACCTCGTCTGAGTTGAAGAAACATATGAGATTACACACAGGGGAGAAGCCATACAAATGCGTACACTGCACCAAAGCATTCCCGAGAAGTGAAGATTTGAAGATCCACATTAAAACACATACAGGAAATCGGAACCATATTTGCTCTGTGTGTAACAAGGGCTTCTACCAGGGCTCCACCCTCAAGGTCCACATGCGAATACATACTGGGGAGAAGCCCTACTCTTGCAATGTCTGCGCCAAAAGTTTCTCACAAACCGGAACACTTAGCGCACATATGAAAACGCACGTCACacagctatga
Protein Sequence: MVFDINNFNSIQINKICRTCLTSEGDMSSIFNLDETFSIKLYDMLLACTPIQILENDGLPVQVCTQCVDYLTRAYTFRQLCERSDFQLRQYINKQQDHIAESLAQNIFNENDSSLIEQNNYEDLDSFSKDSHPKQSVRKTRKTKTDFLNEIDENSSENSRDFEENFEDDTKQPIYPCPECTLCFTTAEDLKVHKQSHPRKVQHVCKICRQQFASSSSLSRHMKIHAGIKPHLCSECGKGFTRSDDLTQHMRTHSGERPYSCYVCQKAFTQSSQLQEHLRAHADQKSFVCTTCGKAFSRYNSLSGHMKIHTGGKSHICGVCGKGLSSSGALNLHMKTHTGQKDHICNLCGKAFAYPGHLTIHTRMHTGEKPYICEICGKGFPDASRRRVHQRSHSGEKPYVCSVCHRGCVTSSELKKHMRLHTGEKPYKCVHCTKAFPRSEDLKIHIKTHTGNRNHICSVCNKGFYQGSTLKVHMRIHTGEKPYSCNVCAKSFSQTGTLSAHMKTHVTQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -