Lhae012743.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_963971575.1
- Location
- OZ020611.1:198802588-198820058[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6.6 1.6e+03 1.8 0.1 2 17 60 75 59 76 0.85 2 17 6.3e-05 0.015 17.6 1.4 2 23 153 174 153 174 0.98 3 17 7.1e-05 0.017 17.4 1.3 2 23 181 202 180 202 0.97 4 17 0.0001 0.025 16.9 3.0 1 23 211 233 211 233 0.97 5 17 0.0006 0.14 14.5 0.7 1 23 296 318 296 318 0.97 6 17 4.2e-06 0.001 21.3 3.4 2 23 325 346 324 346 0.97 7 17 0.00091 0.22 13.9 1.9 3 23 365 386 363 386 0.96 8 17 0.0014 0.34 13.3 9.4 1 23 444 466 444 466 0.96 9 17 0.0001 0.025 16.9 1.8 1 23 472 495 472 495 0.95 10 17 8.4e-07 0.0002 23.5 0.8 1 23 500 522 500 522 0.98 11 17 2e-06 0.00048 22.3 4.2 1 23 532 554 532 554 0.97 12 17 5.1e-07 0.00012 24.2 1.2 1 23 561 583 561 583 0.97 13 17 2.4e-05 0.0058 18.9 1.6 3 23 595 615 593 615 0.92 14 17 0.00028 0.068 15.5 5.2 1 23 621 643 621 643 0.99 15 17 9.9e-06 0.0024 20.1 1.8 1 23 649 671 649 671 0.96 16 17 1.8e-07 4.3e-05 25.6 0.3 1 23 677 699 677 699 0.99 17 17 0.0002 0.047 16.0 0.1 1 23 705 729 705 729 0.92
Sequence Information
- Coding Sequence
- ATGATTAATAAAGATAGTGCATTACCTATGGACAAAATCTGTCGATCATGTATGACAGAGGGTCCAGAAATGCGTTCACTGTATGAACAAGCCAATACAGAATCTATGCAGTTTGCTGAAATGATGATGGCTTGTACTACTGTACAgTGTGCATCTGGAGATGGTTTGCCCAGCCTTATATGTCCCAAGTGCGAGGAACAGCTTAGCACTGCCTACCTTTTCAAAACACAGTGCGAAAGAACAGATGCAGCTTTAAGGGAGTATACAACTCAACCGATTCCCAACACAATTAAAGAGGAGAATGAATCTTTAGATATAGTCGTTAAGCCGGATTTAGGGCTTCTTGACATGTATGAAAATGATCCATACTCAGATGCGGAAAGTCAACATAGTAATTATTCAACAACcgtcaaaaagaaaaagaaagtgAAGGTGTCTAGCAAAGTGAAACATAGGCAgtgtaaatattgtaataaagtTCTGTCGACCAAGGAAGGATTGAAATTACATGAACGACGACATACGGGTGAGAAATTAAAAAGCTGTCCTGTTTGTAATGCtagttttgtaaaaacttatcaTTTAGTAAGACATATGAGTAGCCATAATAAACCACCTGAACAATATAAACATACTTGTGAAGAATGTGGAATGGGTTTTACAAAAGCTTTTCATTTAGCCAAACATAAACGGGAACACAATAATGAATCTGAGAACGCGGAAAACCAAGAGAGCCAAGAAAATCCTGAGGAATCCACATCCAACACGATAGACGCTAGCGGAGTCAAGACGGAGCTGGAGGATGACGATGAGGGGGTACCAGAAGCAGCGCCGACTGAGTTACCAAAGCTGCGCCCTAAGAAGGAAACAGGAGAAAAACAACTTCATCCTTGTAAGGTGTGCAATAAACTTCTTACGACCGTAGCTGGACTGCGGATTCATATGAGACGTCATACAGGAGACGACTTGTCCACctgttatATCTGCTTGAAATCGTTTACTAAATCCAGTCATTTGGCTCGTCACATGCAAACTCATGGGGTGGCTGCTAAGGAAGAGAAGAGTGAACCGAAGGAAAAGAAATATATGGCATGTGAGTTTTGCGATAGAAAGTTTGTTTATAAGAAGAGTTTTCTACACCACATACAAATGGAACATCAGATATCTGAGGACAGTGATACACCTCTCAGTGAATTTGCTACAAtcattacaaaaactaaaactgaAGATGAAAATAATGTCACTGCTGAAGGTAATATTGAAGTAAACGCTGAAGTTAATCCAGATCAAATTGCAGAAGGCCTAGAAACTGATGAATCAAAAAAAGTACACAGTTGTCATGTGTGTAGTCATAAATTCTCAAGAGCGAACCACCTTACCCGACACATGACCTTACATCGTGCTGTCCTCGTTCACAAGTGTGATCGTTGTGAGAAAGCATTTGTTACAGCGGAACATCTAGCTAAGCATGTTCAAGAATATCACGTAGACAGGCCATATGTTTGTTCCATTTGTAATAAGCCATTTAGTCGTGGAGAACATTTAATACGACATCTTAAGGTGCATGATAAAGATAATGAAGGAAAGGATGAACATAAGTGTTCTATATGTGAAAAAGTATTTTCAAGatCTGATCATCTAGCACGCCATACTAAATTACATTTGGCGCAGGACAAAAGACATGTTTGCAACGAATGTGGAAAAGCTTTTAATAGATTAGACAACTTACGAACTCATTCTAGAATCCATACCGGAGTTAGAGATCCTCAGCGTTTACATTTGTGCATTTATTGCGGAAAAGAATTCAACAATTCTAGCAATATGATTGTCCATATGAGACGACATACAGGCGAGAGGCCGTACAAGTGCCAGCAGTGTGGGAAAGGATTCCCCCGATCTCATGATCTCAAGTGCCACGAAAGAACCCACTCCGGAGAAAAGCCATATTTATGTACCTTGTGTGGGAAATCATTCAACAAGAGCAATAAACTGCTTCGCCATACTAGAGTCCATACAGGTGAACGCCCTTACGTCTGCAATCTTTGCGGTCGCGCATTTACCCAGTCCAACGATCTGGCACTGCACATGCGCCGACATACCGGTTCTCGTCCATATGCATGCGGTATGTGTCCCGCCCGCTTCATACAATCTGGGCAACTGAAGGCCCATCGCAGATCACAGGGTCACTGGCTGGAAACCCAACCAGAACTGAAAGGTGCTCATCGTGTAACACCAGTTACACCCATCGCTAATCCACCACCAATCAAATTCAAGACAAgggtgcaaaaaataaaagaagaaccAATCATATTAGGACACACAATTGGTTTGAGTAAAGGTGATGAGGATGTTGTGTTGGATGAAAGAAAGATTTTCCAGGCTAATCCTGCATTGTTAGCGGCTTTTGCTGTTAGGAATGATCCCAGCGCTgcagaaaaacttaaaatggaAGAAGTTCAGAATTTCAGTGTTGCTAATTTGAGTAGGGAGGTTATTCAGCCTATTGATGGTGCACATATGGAACATAGACCGACGACTAGTACTGCTTTTCAAACTAGTGTCGAACCAAGTACGTCTTTTTCGAACAATATTACCATGACTTCAAATTCTTTTTCTGTTAGTGAAGGTTATACTTATCAATCATATGGTTAA
- Protein Sequence
- MINKDSALPMDKICRSCMTEGPEMRSLYEQANTESMQFAEMMMACTTVQCASGDGLPSLICPKCEEQLSTAYLFKTQCERTDAALREYTTQPIPNTIKEENESLDIVVKPDLGLLDMYENDPYSDAESQHSNYSTTVKKKKKVKVSSKVKHRQCKYCNKVLSTKEGLKLHERRHTGEKLKSCPVCNASFVKTYHLVRHMSSHNKPPEQYKHTCEECGMGFTKAFHLAKHKREHNNESENAENQESQENPEESTSNTIDASGVKTELEDDDEGVPEAAPTELPKLRPKKETGEKQLHPCKVCNKLLTTVAGLRIHMRRHTGDDLSTCYICLKSFTKSSHLARHMQTHGVAAKEEKSEPKEKKYMACEFCDRKFVYKKSFLHHIQMEHQISEDSDTPLSEFATIITKTKTEDENNVTAEGNIEVNAEVNPDQIAEGLETDESKKVHSCHVCSHKFSRANHLTRHMTLHRAVLVHKCDRCEKAFVTAEHLAKHVQEYHVDRPYVCSICNKPFSRGEHLIRHLKVHDKDNEGKDEHKCSICEKVFSRSDHLARHTKLHLAQDKRHVCNECGKAFNRLDNLRTHSRIHTGVRDPQRLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCQQCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYVCNLCGRAFTQSNDLALHMRRHTGSRPYACGMCPARFIQSGQLKAHRRSQGHWLETQPELKGAHRVTPVTPIANPPPIKFKTRVQKIKEEPIILGHTIGLSKGDEDVVLDERKIFQANPALLAAFAVRNDPSAAEKLKMEEVQNFSVANLSREVIQPIDGAHMEHRPTTSTAFQTSVEPSTSFSNNITMTSNSFSVSEGYTYQSYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -