Lhae063708.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Liopterus haemorrhoidalis
Gene Symbol
-
Assembly
GCA_963971575.1
Location
OZ020626.1:1641692-1647826[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 3.8e-06 0.00092 21.4 4.1 2 23 742 763 741 763 0.97
2 14 6.3e-05 0.015 17.6 3.2 1 23 769 791 769 791 0.99
3 14 1.7e-06 0.00041 22.5 0.8 1 23 797 819 797 819 0.99
4 14 9.9e-07 0.00024 23.3 1.6 1 23 825 847 825 847 0.99
5 14 0.00025 0.059 15.7 1.2 1 23 853 875 853 875 0.98
6 14 2.7e-07 6.4e-05 25.1 3.6 1 23 881 903 881 903 0.99
7 14 0.00055 0.13 14.6 0.1 1 23 909 931 909 931 0.97
8 14 3.4e-06 0.00082 21.6 1.0 1 23 937 959 937 959 0.99
9 14 8.8e-06 0.0021 20.3 0.1 1 23 965 987 965 987 0.98
10 14 0.00016 0.039 16.3 4.7 1 23 993 1015 993 1015 0.99
11 14 0.0013 0.31 13.5 1.4 1 23 1021 1043 1021 1043 0.97
12 14 1.2e-07 2.8e-05 26.2 0.4 1 23 1049 1071 1049 1071 0.98
13 14 3.1e-07 7.3e-05 24.9 0.2 1 23 1077 1099 1077 1099 0.98
14 14 5.3e-06 0.0013 21.0 1.4 1 23 1105 1128 1105 1128 0.98

Sequence Information

Coding Sequence
ATGGTTAAACCATTATACGTAACTGAAGCCAAAGAATTATTACTATCTTCATCGGAAAATGATAAAACTGCAGATATTAATCATGTAAATGAAGAATTTCAGAACGAAGACTTTTCAGTACGTAATGAAATATACAGAGTTGATTCCGAAGATTTACTTCTTTCTTCCGTAAATAGTGAAATTTTAAATGATGACAATATCAAGAAGAACAGAAGAGAAATGAAAAGATTAAGAAGAGAAATTCAGAATGAGATGCTGTTAACTGCTTCAGTTCGTCAGGATTTACTTGGGGAAAAAGATTTACGTAAAAAACTAGCGATTgctaatattaatgaaaaattaacagatATAGTAAAAGACGACAACAGTGATAGTTCAGCGAGTTATGACAGTTGGTACTGGCATCGCACAAAAAAAACCAAATCACCAAAAACTAAATTTCGTtcatataaagaaatattaaaatatagtgaagattttcaaaaaataattaaagatacttacaataaacaattaGAAAAACTTGTTGAAACTGGTCTCGAAGAATCTGGAGATGAATATTTAGACCCATACCATTTATTTCATCACATTTTAGGACATGAAATTATATATATGAAACCAAGAATAATATGTTGCTACAAATTAAAAGATTACAAAAAAGGTGATGGGGTGATAATAGAATTAAATGATGAACAAATTTATGATGGGTTTTATGTCAGTACTGCCCATTGTAATGAAAATTATcaggttttaattttaaaaaatgtatgcgTCTTTCCAAATATTAATCTTGATAATTGCTATCAACAATCTTATTACTTCAGCACCGAAATAAAAGATCTAAGAATTCTACCAAATTTTACGCAAAATGGTTTGACCTACAATGAAtatctttctttaaaaattctagCTCAACAATCCCAATTGCTAACACTTCTCGACTGTCGTTTTAGAGAGATACTTAACTACTTAAAAAAACTAGAAGCGATCTCATTACTCATTTTAGGTTCACATGTCGAAAGTGCTCgttttacaaaaatatcttATCTTGTTATAGGTACaccaaagaaaatatatatatttgacttaATAACAACTCCTCTTCACTTCCTAGAAATGGGTTTACGGGACATTTTAGAAGACCCAAGTATCCAAAAAATAGTAATCGATGGTAAAATCGTTGCCGATATACTTAAAAATCGATGCaatattaatttagttaataTTTATGACATTGGTATCGGTGATTATTGTATAAGTCGTACTAAAAATgaagatatgaaaaataaaaaccttTTAACCTACCCAGAACTcgcggataaatatttaaatatcccACCTTTGATGTTAGAGCCTCAACATAAGTTAAATTTTGTTAGATCCCATTATTGCCGACCGTGTTCCGATAGTATGCGGTGGCGTATTGGTCTTGCTGTGGTTTTTATGATACCAATACGACGAGTACAATTGTATTATCATACTCCACATTTTTATAGATTATTAAATGTTTTTACAGAATTAGATGCTTACGGTATGATATGTTCTAAATGTTGTACAGAACTGGATGCCATTCACAGATTTCGCGACAAGTGTCTAAGAAAAAAACAACTATTTATCGACTGTATGACAGAATTATGCTCTCTTAAAGGCTCTTGTGGTGTCTACAATATCCAATTTGACGGtgacaaatataaagttttgaaGGACAGAGCATCTATTGAAGCAAGAACTTATTCGATATCGACACAAGATTCTGTAACAAGTGATATCGATGATAGTGGAATTCAAGTAGTGAGCTTAAAAGTGGAAGCCAAAGAATCTGAAATTTTTGAagATAATACCAATATAAATGAACAATCATGTAGCATTCCACTAACAGATGGTGTCACATGTCAAAAAATCACTACAAATAATACACTTCAAATTAAGacagaagatataaaaaataaagaaaatataacagaAACTTATGCTGTTCCATCAAGAGATATAGAAGCTATTTATCTTCCAACTGAACAAATTAAACCTGAACCTGAAGATACTGAAAATTTTCATGAATCCACGATCAAATACTCAGTGGGCAGTGTTGCCAGTTCTTCAACAggatatattaatgaaaatgtgGCAACACAGGGCATTCATTTCTTCGCTATGAATGAAACTGTACCTACCCAATCAACAGCTAAAAATATACCagagcaaaaatctgaaaataaaaaactaaaatgtgaaGTTTGTCATAAAGTATTTACCCATCGATCAGCATTATATGCCCATCGTCGCACCCATAGTGGTGAAAAACCTTATACATGTGAATACTGTTCCAAGTCATTCACAACAATATCAACCATGCATAGCCACGTTCGTATCCATACAGGAGTCAAACCTTATACATGCAACatgtgtgataaagcattttcacaaatatcagcaTTAAATTCTCACAAACAAACCCACACAGGTGATAGACCTTTTAAATGTACAtactgtgataaagcatttgcgaGAAATACAACACTAGTATTACACACACGAACACATACAGGTGAAAAGCCTTATGCGTGTGATTTATGTGAAAAATCATTCTCTAATAAATTAGTACTCGTAGCACATCATCGTAAACATACCGGTGAAAAACCGTTTAAATGTAATCATTGCGAAAAATCATTCGGACAAAGATCAAACTTACGTAATCATATTTTAACACACACTGGTGATAAACCACATGTTTGCGAAGAGTGTGGTCAGGCTTTTGCACAGATCGGAGCATTAAAAGGTCACAAATTAACTCATTCCGGAGAAAGACCTTTTAAATGTACTGAgtgcgataaagcatttgcacgtaATATGACTTTAGTCTTACATAAACGAACACACTCAGGAGAAAAACCTTTTAGTTGTGCTGAatgtggtaaagcattttccAACAATGGTAGATTAGCTATACATACACGAGTTCATACAGGTATAAAACCATATACATGTGAACAATGTGGAAAATGCTTTATGTTACGTACTAATTATGTAAGGCATTATCGTTCCCACACTGGGGATAAAAGACATATCTGTGAACAATGTGGGAAAGGTTGTTTATCTAATGGAGATCTTATTAAGCATATACGTTCCCATACAGGAGAAAGACCATTCATTTGTGTTATTTGTGAAAAAGCGTTTTCAGAACAATCCAATCTTAGAAAACATATTCGGACACATACTGgtgaaaaacaatttatttgtgAGGAATGTGGGAAAGCTTTTGTGACAAACAGTCTTCTTAACAACCATAAAAGGGTTCATAGTGGAGAGAAACCTTTTCAGTGTGATCAATGTCCTAAAGCATTCACGGAGAGGTCTACACTTGCAAAGCATAAACGTAGgacacataattaa
Protein Sequence
MVKPLYVTEAKELLLSSSENDKTADINHVNEEFQNEDFSVRNEIYRVDSEDLLLSSVNSEILNDDNIKKNRREMKRLRREIQNEMLLTASVRQDLLGEKDLRKKLAIANINEKLTDIVKDDNSDSSASYDSWYWHRTKKTKSPKTKFRSYKEILKYSEDFQKIIKDTYNKQLEKLVETGLEESGDEYLDPYHLFHHILGHEIIYMKPRIICCYKLKDYKKGDGVIIELNDEQIYDGFYVSTAHCNENYQVLILKNVCVFPNINLDNCYQQSYYFSTEIKDLRILPNFTQNGLTYNEYLSLKILAQQSQLLTLLDCRFREILNYLKKLEAISLLILGSHVESARFTKISYLVIGTPKKIYIFDLITTPLHFLEMGLRDILEDPSIQKIVIDGKIVADILKNRCNINLVNIYDIGIGDYCISRTKNEDMKNKNLLTYPELADKYLNIPPLMLEPQHKLNFVRSHYCRPCSDSMRWRIGLAVVFMIPIRRVQLYYHTPHFYRLLNVFTELDAYGMICSKCCTELDAIHRFRDKCLRKKQLFIDCMTELCSLKGSCGVYNIQFDGDKYKVLKDRASIEARTYSISTQDSVTSDIDDSGIQVVSLKVEAKESEIFEDNTNINEQSCSIPLTDGVTCQKITTNNTLQIKTEDIKNKENITETYAVPSRDIEAIYLPTEQIKPEPEDTENFHESTIKYSVGSVASSSTGYINENVATQGIHFFAMNETVPTQSTAKNIPEQKSENKKLKCEVCHKVFTHRSALYAHRRTHSGEKPYTCEYCSKSFTTISTMHSHVRIHTGVKPYTCNMCDKAFSQISALNSHKQTHTGDRPFKCTYCDKAFARNTTLVLHTRTHTGEKPYACDLCEKSFSNKLVLVAHHRKHTGEKPFKCNHCEKSFGQRSNLRNHILTHTGDKPHVCEECGQAFAQIGALKGHKLTHSGERPFKCTECDKAFARNMTLVLHKRTHSGEKPFSCAECGKAFSNNGRLAIHTRVHTGIKPYTCEQCGKCFMLRTNYVRHYRSHTGDKRHICEQCGKGCLSNGDLIKHIRSHTGERPFICVICEKAFSEQSNLRKHIRTHTGEKQFICEECGKAFVTNSLLNNHKRVHSGEKPFQCDQCPKAFTERSTLAKHKRRTHN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-