Lhae041411.2
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_963971575.1
- Location
- OZ020618.1:16464667-16466706[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5.1e-06 0.0012 21.0 0.8 2 23 143 164 142 164 0.97 2 19 0.042 10 8.7 2.4 1 23 170 192 170 192 0.98 3 19 1.4e-06 0.00035 22.7 0.6 2 23 199 220 198 220 0.97 4 19 0.00013 0.032 16.6 4.0 1 23 225 247 225 247 0.97 5 19 1.1e-05 0.0026 20.0 0.7 1 23 252 274 252 274 0.98 6 19 1.5e-06 0.00036 22.7 2.4 1 23 280 302 280 302 0.98 7 19 3.6e-07 8.8e-05 24.6 1.2 1 23 308 332 308 332 0.96 8 19 1.9e-06 0.00046 22.4 1.8 2 23 339 360 338 360 0.97 9 19 7e-06 0.0017 20.6 3.6 1 23 366 388 366 388 0.98 10 19 2.2e-05 0.0053 19.0 9.1 1 23 394 416 394 416 0.98 11 19 0.0002 0.048 16.0 0.8 2 23 424 445 423 445 0.96 12 19 4e-05 0.0097 18.2 1.2 1 23 451 474 451 474 0.95 13 19 0.011 2.6 10.5 1.6 1 23 478 501 478 501 0.98 14 19 0.011 2.6 10.6 1.6 1 23 507 529 507 529 0.97 15 19 7.7e-06 0.0018 20.5 0.3 1 23 535 559 535 559 0.96 16 19 0.00012 0.029 16.7 3.2 1 23 567 589 567 589 0.97 17 19 1.4e-05 0.0033 19.7 1.3 1 23 595 617 595 617 0.97 18 19 2.8e-05 0.0066 18.7 1.1 1 23 623 645 623 645 0.98 19 19 8e-07 0.00019 23.5 5.0 1 23 654 676 654 676 0.97
Sequence Information
- Coding Sequence
- ATGGATTATTCAAGTgaaatttataatacaattcCAATAAAACAAGAAATAGTTGAAGAAAACGAGAATGAATTTCAATATAAACAATCCGATGATGCAACACTACAAGAAACAAACGAACAATATCAAGCAGAAAATAAATCCTTATATGTTAAACAagaaaaagattttgaaaacgaTAGACTTCGAAGAGGATACGAGATGAGTACGATGGATAGTGATATCATGTCATTTTTATCTGTGTCTTTACAAGAAAATAATCAAGAGTATAATGTGCCCCATACATCAAAAGAAGAAATATTTACTCAGATTTGCAAAACAATTGACAAAATAGAAAATCCTGAGCCGGAAACATTTGAGAATTTTGATGTTGTACCTGCTAAAAAACCAATTAAAACTGAAAAAGATGATAAATTAGGTGGTGTTTCTTGTCCGACTTGTAATAGAGTGTTTAAAGATTTTTCAACATTACAAGGACACATGAAAAGACATTTGacaaagaaaaaatacatatgtcgaatatgtaaaaaagttaaAGATAGTTTACTTCATATACAAAGACATATGAGAACACAtcttactgtaaagttatggACCTGTCCAATATGTTCGAAGAGTTTTAGTCTAAAAgaatatctaaaaaaacatcTCCAAGTTCATGAAATGAAAAGATTTTCTTGCGGTAGATgtgatagaaaatttaaaagtaaatatcaCTTAGGAAGACACGAAAAGGTACATTCAGGGATAAGATTTAgctgtgatcaatgtgataaaactTTTGCGTTAAAAGAATATCTTAGTGTTCATTTACAAACACATTCAgaaaataaaccatttaattgcaaattatgTACAAAAAGTTTCGTAAGTTCTTCATATTTATCAGATCATATGAGACGACATTCTGGTCAGAAACCATTTGCATGTACGATGTACAACTGCGGTAGATCATTTTATAGTAATTCCGATCTTAAAAAGCATATGCGTATACATATTTCGGAAAGAAAAGTACCATGTCCGCAGTGTCATCGTAAGTTTTATAGTAACTCGCAGTTACAAGTTCATCTAAAAACACATTcggataataaaaattttagttgtaatatttgttataaaaaatttgatttttcctCGCAGTTCAATCAACATATGAGAATGCATACAGGAGAAAAACCATTTTCTTGTCATCTTTGTGATAAACATTTCACAACGTCATCTCATATGTATCGACATATACGATCTCACAAAAAcgataatgaaaatttaacttGTGAAACTTGCGGAAAAGAATTTAAACGCttaccatttttattaaaacacaaAGAAATGCATCTCTCTGCCCAGATATTTCTTTGTGATGTGTGCAATAAAGAATTCTCAAGTAATTCAGAAGTTCTGCGACATAAAAGAAGGACTCATGATAAATCATATAAATGTAGTTATTGCAAtgacacttttaaaattaaagttacaATGATAGAACATGTTCGTAGAAAACATACTTTTGAAAAACCACATCCTTGTACATTGTGTAGTGATagattttatacaaattttgaattattagcACATTTACGAAATCATACAGATGAACGACCATTTATTTGTCCTGAAGAATCATGCGGGAAAAGTTTTGGGACTAAAACAGACCTAAATAAACATGTACGAAACCATCGTAATGGtttagaaaaaagatttttttgtgatCTTTGTGATAAAGGGTTTCATTATAACAATGAACTTCAAAGACATCTTCAAAGGCATCAAGGGCTTAAACCTTTTGCttgtgatttttgtgaaaaagctTTTACAACAGCATATTTACGGAATCGTCATATGAAAACACATACAGATGCAAAAccatttatttgtgaagtctgtGATGCTACTTTTATGGGTAGTTCTGAATTACATAAACATATGAAGAAGCATGATAAAGAAACTAAAGTAACAACACATCCATGTCCTATGTGTGATAAAAGATGTAGTACAAAAGACAAGTTACGAAGACATATTCGAACACATACAGGTAAGTAA
- Protein Sequence
- MDYSSEIYNTIPIKQEIVEENENEFQYKQSDDATLQETNEQYQAENKSLYVKQEKDFENDRLRRGYEMSTMDSDIMSFLSVSLQENNQEYNVPHTSKEEIFTQICKTIDKIENPEPETFENFDVVPAKKPIKTEKDDKLGGVSCPTCNRVFKDFSTLQGHMKRHLTKKKYICRICKKVKDSLLHIQRHMRTHLTVKLWTCPICSKSFSLKEYLKKHLQVHEMKRFSCGRCDRKFKSKYHLGRHEKVHSGIRFSCDQCDKTFALKEYLSVHLQTHSENKPFNCKLCTKSFVSSSYLSDHMRRHSGQKPFACTMYNCGRSFYSNSDLKKHMRIHISERKVPCPQCHRKFYSNSQLQVHLKTHSDNKNFSCNICYKKFDFSSQFNQHMRMHTGEKPFSCHLCDKHFTTSSHMYRHIRSHKNDNENLTCETCGKEFKRLPFLLKHKEMHLSAQIFLCDVCNKEFSSNSEVLRHKRRTHDKSYKCSYCNDTFKIKVTMIEHVRRKHTFEKPHPCTLCSDRFYTNFELLAHLRNHTDERPFICPEESCGKSFGTKTDLNKHVRNHRNGLEKRFFCDLCDKGFHYNNELQRHLQRHQGLKPFACDFCEKAFTTAYLRNRHMKTHTDAKPFICEVCDATFMGSSELHKHMKKHDKETKVTTHPCPMCDKRCSTKDKLRRHIRTHTGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -