Lhae018345.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Liopterus haemorrhoidalis
Gene Symbol
ZNF236
Assembly
GCA_963971575.1
Location
OZ020612.1:52639449-52653356[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.00029 0.071 15.5 3.2 1 23 145 167 145 167 0.98
2 25 0.027 6.6 9.3 0.7 1 23 173 195 173 195 0.98
3 25 0.00013 0.031 16.6 0.6 2 23 201 222 201 222 0.96
4 25 3.1e-05 0.0075 18.5 0.3 1 23 228 250 228 250 0.97
5 25 5.3e-05 0.013 17.8 0.9 2 23 261 282 260 282 0.96
6 25 4.7e-05 0.011 18.0 5.7 1 23 307 329 307 329 0.98
7 25 9.4e-06 0.0023 20.2 0.3 1 23 335 357 335 357 0.98
8 25 3.1e-06 0.00074 21.7 0.5 1 23 363 386 363 386 0.97
9 25 0.0021 0.5 12.8 2.4 1 23 396 419 396 419 0.97
10 25 0.00014 0.034 16.5 4.4 1 23 498 520 498 520 0.98
11 25 0.00017 0.041 16.2 1.1 1 23 526 548 526 548 0.99
12 25 8.9e-06 0.0021 20.3 1.3 2 23 555 576 554 576 0.97
13 25 0.00049 0.12 14.8 5.3 1 23 582 604 582 604 0.97
14 25 0.00069 0.17 14.3 1.7 1 23 654 676 654 676 0.98
15 25 0.00015 0.037 16.4 0.2 1 23 682 704 682 704 0.99
16 25 8e-06 0.0019 20.4 3.4 1 23 710 732 710 732 0.98
17 25 0.015 3.6 10.1 2.8 3 23 740 760 738 760 0.97
18 25 0.0052 1.3 11.5 1.3 3 21 1070 1088 1068 1089 0.94
19 25 4.3e-07 0.0001 24.4 3.3 2 23 1156 1177 1155 1177 0.98
20 25 5.9e-05 0.014 17.7 2.1 1 23 1183 1205 1183 1205 0.99
21 25 0.00023 0.056 15.8 0.3 1 23 1211 1233 1211 1233 0.95
22 25 0.0017 0.41 13.1 3.0 1 23 1239 1261 1239 1261 0.98
23 25 3.7e-06 0.00088 21.5 2.5 1 23 1393 1415 1393 1415 0.97
24 25 2.2e-05 0.0053 19.0 5.0 1 23 1421 1443 1421 1443 0.98
25 25 2.3e-05 0.0056 18.9 0.8 1 22 1449 1470 1449 1470 0.95

Sequence Information

Coding Sequence
atgAGCAATAGTCAGGGTCAGCCTGTGGTACAAAATAACGAAAATGAAACTGTTACTTTAATTGCTTTACCATTACATCTTTTTCAAGCAACACAAAATAATCAGTTAGTTGTGGAACATAATTTATTAATCAAAACATTACCAGACGGTTCTTTAGTATTAGATACAAATCAGcttTCAGATGGTACAGAAACCATTCCTATTACCGCAAGTGTTGAAAACAGCACgccaaatgaaaagaaaaaggaaacCGATTCACCTTCAAAAGGCAATAACAAAATTAGAACCTCTCCAAACAATATATCTAAGTCTAattcttcaaatgaaaaaaatggtAAGGTGAAAATAAGGTACATAAATAGTAAAACAACCCCCGATCTGGTTGTACGTCCAGGTCGTCCTCGTAAAATAAAACCATTAGAGAAAGGTCCGTATAAATGTACACACTGTGAGAAGGAATTCGAAAAATGGGTATTATATAAAAGACATGAAAATTCTcataataatgataaaaaatataaatgttcaAATTGTGATGCATCGTATcatattttatcaaattatattttacatgtTGCGACACATAATACAAATAAACCCACTTGTCCTGAATGTGGGAAAAATTTCCAAAGAGTAGCTAGTTTAAAAGCGCATTTAATTCATCATGAAAAAGAAGAAACCTTTTACTGCCAAGATTGTGATATTACATTTAGTAATGACgtTGATTTAAACAATCACATAAAAGAGCACTGTGTTGAGAAAAAGTCCATTGCAAACCTACAgtgtaaatattgtaattataaatttactgtcccagcggaatataaaaaacatatgaGCGAACATAATAAAATGAGAAATATTTTACGAGtgcatgcaaaaaaaaagacaaagagAAAAATTAGTCATGATCGAAAACACCAGTGTTCGCATTGTAAAAAGTCATTCGATAAATTAAGTCAACTGGATAGACATTTGAGAGTCCATagtggagagaaaccatttgtGTGTGTGATATGTGAGAAGGCATTTAATCAGAAAGGATCTTTACAACTTCATATGACAAAACACAATGGACTTAGGCCATATAAATGTACATTATGTccggcaaaatttagtcaaaaaggAAATCTACGTGCCCATATTTTAAAAACCCATTCAATCCCAAGACCTGGTGAAAATGTTTACTCTTGCACAGAATGTTCATGTGTGTTTAAAAAATTAGGTAGCTTAAATGGACATATGACCCGCAATCATCCAGAAACAAATGAAGATATAAAATCTGTAATATCACAATTGGTAGCAATGCAAGGTAACATGAATGTTACTGAAAAAGATATTCTACAACAAGCAATTCTACAATCAGATCTTAATAATGATGTAGCGAACGATGAAAAAGGTGTATCTACAACATTTTCAACATATGCTGACTCTACTGATggtgtaaaaaaatatgttattaaacaGAGAATATCTGGTTCAGATCGATGGCATCAATGTAATTATTGCTGCAAGGAATTTAGAAAACCCAGTGATTTAGTTCGCCATATTCGTGTTCATACGCGAGAAAAACCGTATAAATGCAGATTATGTATTAAATcttttgctgttaaatcaacTTTAACCGCTCATttaaaaacacacacaaatttaAAAGAACTTAAATGCAGTCACTGTCCTAAACTCTTCTCATCATTAAGTAATTTAAACGTGCATTTACAAGTTCACGCGAAAAATAAACCACATATGTGTCTGGtatgtaataaatcatttaaaacaaCGGTACTATTAAAACACCATTTACGACAACATATGAGCCCTGAAGAAATCAGCAAGATTCTTAATGTACCAGACGAAGAGATGCAAGAACcaattataataacaaacaGAGGTCTTCAAACTGTGGATGTACCATTAAAAAAGCGACCATTAACAGAAGCTGGTGCAAAACATAGACCATACAGCTGCACAGTATGTGGTGCTGGGTTTAGAAAAATGAGTCAATTAAAATATCACCACATAAGTCACACTGGGCAGCGTTCatacaaatgtaatatatgtttaaaattgTTCCCGTTAAATAGTGGTTTAAAAGCTCATATTTTAACACACAATGGTGCGAAACCGTATAGATGCCAGATATGTAGTAAACATTTTACTACAAATGGAAGTTTACGAAGGCATTTAGATTCACACAGCACTACAAGACCTGTAATATGTCCTTATTGTTTTAAGAACTTTAAAACTGTAGTCACCTGTCGTAAACATATTAAGACTCATCAAGGTGAAACTGCTGATGAAAGTAAAGAAAGTGATtttccacaaaaaataaatgaattaccaTACCAACCTGATTTAGAAGATGCTTTAGCTGATGATACTTTTACTTTAACTCCAATGGATGCAGAATCTATTATAATTACTGAAGATAATGTTCAGTCACAAAATTTACAAACCCTACAAGCTGATGAAACTGGTACTGTTGTTTTACCAATAATACCATCACAAGAAAATTTAACTCAAGAAAATATTAGGGAAATTGAAGATACACTTAATACTCAAATGTTGAATATTATTGGCAATGAAAACTTTATTGATGCTTCTGTTTATTCTAATAAAGATCCTATTAGTAGTACAGATGAATTGGTTAATACATTGACTGGAaatgatgaaaataataaaattattgatgaTAATCAGTTGCTGTATCAGACAGTTTTTGTGAATGTTGCTGAACCATTGCCAACTTTTGACagcaattttgatattaatcagTTAGTTTTATCACAACTTAAATTGCAGaatgaATCATTATTTCTAACGGATTTAAGTTCAATAAATATAAACGATTCAAATGTTTTGCTTCCATTTCAACTCACAACACAAATAGATTCGCAGAATGGTGAAATGATGATGATACCGTCCGATTTAAACCAAAACTTGCCAATAAACATACAAAATGAAATAGATCCTCTTGAAACAAATatacaaaatgtatttatgcCAGTTACTGATACAAATATGATACTGGACACTGAACAAATACAGGCTTCCCCAGATATACAAACAATTTTAAACCCTGATAGTAACatagaagaaaatttaaataatattacaatcgTAACAAATAATAGCATCGTTCAGGAACCTGGTGAAATACCATTATTTACTAGTGTTAATGAAGTAACGACTATAACACCACAGATTTGTAATATTTGTAAAGTTCAGTTTACAACTGAGAGACAGTTAAAGACACATCAGTGCATAAATTTAGTgcaagtggaaaatatgcttcaaaatcaagaagcggAGAAGGAAGCAGAGAATATGAATGAAAATTCATTacttataaataatgtaaagaCAACAATAGAAAAGGAAAGCAGTGTTgtggataaaaatgtttcaaataatttacagGAGACAGAAAAACAATCTGAACCTAAAGGATCAGTGCACAAAAACCAGTGTACATACTGTACTAAAAGTTTTAAGAAGCGTTCTGACCTAGAGCGGCATCTTCGGACACATACTGGTGAACGTCCTTATAAATGTGACGAGTGTGCGAAATGTTTCTCCTTGAAATCAACGCTCGAGGGACACCAGAAAATACATCAGGGCAAAAAGGAATTTTTATGCGTAGTGTGTAATTCAATGTTTGCTACCAAAGGCAGTTTAAAAGTACACATGAGATTGCATACAGgttccAAACCTTATAAATGCGATTTCTGTAATATGAAATTTCGTACTCCTGGCCACCGAAAGTCTCATCTTGATGTACACTACAAAGAAGCACTCAAAACTGGAAAGGTTCCAGAAGAGATCATTACACGAAAAGCtaaaatattaacaatagtAGATGCTTCTATCCAGGAATCAGTTAAAACTGCAAACACCGAAATATTAACCAATGAAATTAACCTTCAAAATGTACAAGAGTCTTTCGAACAATTCAGTAATTCCGAAACACTAATAATAGAATCTGATAACACAGTTATTCCGTTCAGTATTACGCAGGGTgaagatattataaatataaatcctaATGTTTTAACTGATGAAAATGGTCAACAGAAAATAACAGTTTTAGATAGTAAATCAAAGGAACAATTTGAACAGattttcagtaaaaatattgtacaaATACAATCTATTCGAacaactaagaaagaaaaacatCCTTGTTCTGTTTGTAATAAGGAATTTAGTAGcaaatatttcttagaaagACATATGAAAATTCATACAAGAGAGAAAAACTTTTGTTGTGATATCTGTACAAAGAAATTTAACCAGAAGAGTGCACTGAAAGAACACAAAAGAACCCATATTGGTCAAAGACCGTATAATTGCCCATATTGTTCAAATACGTTTAGTCAAAGAGGAAATCTAAAGACGCATATAAAAAGGTAA
Protein Sequence
MSNSQGQPVVQNNENETVTLIALPLHLFQATQNNQLVVEHNLLIKTLPDGSLVLDTNQLSDGTETIPITASVENSTPNEKKKETDSPSKGNNKIRTSPNNISKSNSSNEKNGKVKIRYINSKTTPDLVVRPGRPRKIKPLEKGPYKCTHCEKEFEKWVLYKRHENSHNNDKKYKCSNCDASYHILSNYILHVATHNTNKPTCPECGKNFQRVASLKAHLIHHEKEETFYCQDCDITFSNDVDLNNHIKEHCVEKKSIANLQCKYCNYKFTVPAEYKKHMSEHNKMRNILRVHAKKKTKRKISHDRKHQCSHCKKSFDKLSQLDRHLRVHSGEKPFVCVICEKAFNQKGSLQLHMTKHNGLRPYKCTLCPAKFSQKGNLRAHILKTHSIPRPGENVYSCTECSCVFKKLGSLNGHMTRNHPETNEDIKSVISQLVAMQGNMNVTEKDILQQAILQSDLNNDVANDEKGVSTTFSTYADSTDGVKKYVIKQRISGSDRWHQCNYCCKEFRKPSDLVRHIRVHTREKPYKCRLCIKSFAVKSTLTAHLKTHTNLKELKCSHCPKLFSSLSNLNVHLQVHAKNKPHMCLVCNKSFKTTVLLKHHLRQHMSPEEISKILNVPDEEMQEPIIITNRGLQTVDVPLKKRPLTEAGAKHRPYSCTVCGAGFRKMSQLKYHHISHTGQRSYKCNICLKLFPLNSGLKAHILTHNGAKPYRCQICSKHFTTNGSLRRHLDSHSTTRPVICPYCFKNFKTVVTCRKHIKTHQGETADESKESDFPQKINELPYQPDLEDALADDTFTLTPMDAESIIITEDNVQSQNLQTLQADETGTVVLPIIPSQENLTQENIREIEDTLNTQMLNIIGNENFIDASVYSNKDPISSTDELVNTLTGNDENNKIIDDNQLLYQTVFVNVAEPLPTFDSNFDINQLVLSQLKLQNESLFLTDLSSININDSNVLLPFQLTTQIDSQNGEMMMIPSDLNQNLPINIQNEIDPLETNIQNVFMPVTDTNMILDTEQIQASPDIQTILNPDSNIEENLNNITIVTNNSIVQEPGEIPLFTSVNEVTTITPQICNICKVQFTTERQLKTHQCINLVQVENMLQNQEAEKEAENMNENSLLINNVKTTIEKESSVVDKNVSNNLQETEKQSEPKGSVHKNQCTYCTKSFKKRSDLERHLRTHTGERPYKCDECAKCFSLKSTLEGHQKIHQGKKEFLCVVCNSMFATKGSLKVHMRLHTGSKPYKCDFCNMKFRTPGHRKSHLDVHYKEALKTGKVPEEIITRKAKILTIVDASIQESVKTANTEILTNEINLQNVQESFEQFSNSETLIIESDNTVIPFSITQGEDIININPNVLTDENGQQKITVLDSKSKEQFEQIFSKNIVQIQSIRTTKKEKHPCSVCNKEFSSKYFLERHMKIHTREKNFCCDICTKKFNQKSALKEHKRTHIGQRPYNCPYCSNTFSQRGNLKTHIKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-