Lhae049453.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- cGLR
- Assembly
- GCA_963971575.1
- Location
- OZ020620.1:42493917-42507990[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-06 0.0036 18.9 0.0 4 34 403 433 400 440 0.85 2 2 0.0074 3.7 9.2 0.0 4 29 470 495 467 505 0.89
Sequence Information
- Coding Sequence
- ATGGATGCGAACAGAAGCAAATATAATAAACTAGAAAACGAGTTGCATTTggtgaataaaaattttgtaactCTCAACGATAATGAGAAGAAAAAATACAATCCGGTATTACAATATGTCATTGAtgatataattgaaaaaatgaaaagtGTTAGtacactttttaaaaatttatatgaaagtgTTTACTATGGTGGAAGTTTTTATGATAATTTAAAAGTGGGTAAACCTGAAGAATATGACATTGATCTTAAGATGACTTTGCCGAAACTTTTGGAAACAAAACTTGTGATTTCGAACGAACCTGGATTTGTTAAAGTGACATTACCTGGCTGGGATAACTTGGAGAAAAATGCAGCTGAATTCCAGAAATatagtgaattaaaaaaaatgaaagatgATAAAAACTATTTGTTACAAGATAAAATTTTGAGCTGGATGGAGCAAATTGTTAATAGAGCATTGAACAAGTACGAAAAAGTAAATGAGAAGATTTTTCTAGTACCatataaaaactacaaaatgGAGgtgaaattgaaaaaaggtGGACCTGCTATGACTTTGACAATTTCAAGTAAAGAACTAGATATATCAATGGATGTAGATTTAGTTGCATCATTTAAATTTACTGAAGAAAATTGGCCTGATAAACCATTTGAACCTCTTCCTAAAGAATGTATGAAAAAGGAATTTTTGGTTGTACCAAAAAAACCAAAAGGCCAAATTAATGATATAGCAGAACGTTTATGGAGACTCTCCTTCCAAGAACAAGAAAGAGACATTATGAATGGAAAAGGAAGATTTAAACCTGCTTTacgtttaatgaaaaaattacgtGACACTCAAGGACAATGTAAAATATCAAGttatttcttaaaaactatatttttaaacgaAGTTACTGAATTAGCCAGAAAAAAAGATACCGAATTTTGGGAATTACCATTAGGTTTTGTATTTATGCATATGTTAAATCAGTACCAAAAATGTCTGGAAAATGGTAATGTACCATACTActggaataaaaaaaataacttgttGAAAGCGATCGATCCAAATACTATATCAAACTataaatttaaagtgaagaaaattattgacaCAATTGACAGAAAATTAGATACGCAACCTGATATTATTATGGAATATATTTTAACTAAAACTGAGAATGATGAATACTCCGAAAATAACAACTGGACGAAGAACAAAATGCAAAAAGCAATAAAAGCTGTTCGAAAAGAGAAGAGTGATCTTGAGAAGGCTGCCCAACGTTATGGAGTTCCacttgaattattaaaaaatagagTTCAAAAAGTTGATAATGGATTTACTATGAATGAAgcttctgaaaaaaatattgatactccAGGAATACTTTTCAGATTCTTAAACTCTTGGACAACAAATGATATGAAAGATGCTATTCAGATGGTCCGAGGAAAATCAATGGATTATGAAAAAGCTTCTAATTATTTTGCAATCCCTTtggatttattaaaagatcGTGTTGAAGAAGTGGATTTGGGAGTTCCTCTTCGTTTAGCTGGAAGAAAAATAGGAAGAGATCACATAGCCACCCAATACAATcttttgaaattttacaaagacctaaaagagtttaatacaaataacaatattcttaaagaaaatatatgGATTCTTCTTGATACAGGAATTATAACTGgagaacaaatattgttttgtaaaccTAATAGGATACAAGAAAAATCAGTTAATGCCACAGTTTATACAGCAAACATCTGTATTAGTGCATCTGGAAAATATATATCACCGGCATTAATATTTCCTACAAATGCACAATCCGtttatcATGCATAA
- Protein Sequence
- MDANRSKYNKLENELHLVNKNFVTLNDNEKKKYNPVLQYVIDDIIEKMKSVSTLFKNLYESVYYGGSFYDNLKVGKPEEYDIDLKMTLPKLLETKLVISNEPGFVKVTLPGWDNLEKNAAEFQKYSELKKMKDDKNYLLQDKILSWMEQIVNRALNKYEKVNEKIFLVPYKNYKMEVKLKKGGPAMTLTISSKELDISMDVDLVASFKFTEENWPDKPFEPLPKECMKKEFLVVPKKPKGQINDIAERLWRLSFQEQERDIMNGKGRFKPALRLMKKLRDTQGQCKISSYFLKTIFLNEVTELARKKDTEFWELPLGFVFMHMLNQYQKCLENGNVPYYWNKKNNLLKAIDPNTISNYKFKVKKIIDTIDRKLDTQPDIIMEYILTKTENDEYSENNNWTKNKMQKAIKAVRKEKSDLEKAAQRYGVPLELLKNRVQKVDNGFTMNEASEKNIDTPGILFRFLNSWTTNDMKDAIQMVRGKSMDYEKASNYFAIPLDLLKDRVEEVDLGVPLRLAGRKIGRDHIATQYNLLKFYKDLKEFNTNNNILKENIWILLDTGIITGEQILFCKPNRIQEKSVNATVYTANICISASGKYISPALIFPTNAQSVYHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -