Lhae062936.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_963971575.1
- Location
- OZ020625.1:19865185-19866081[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.2e-11 3.1e-08 35.1 0.0 2 42 14 54 13 57 0.92
Sequence Information
- Coding Sequence
- ATGCCAAAAACCCTTAAAAGACCAATTCTGCAGTACAAAAGAGAGGCAGTTCAAAATGCTATTTTAGCTATAAGAAAAGACAACATTAGTATTAGGGAAGCAAGTAGGCGCTATGGAGTACCTCGTGGCACATTGCAAGATAGGCTCCATGGAAGGGTTTCTGAAAATACATCAAAAATGGGACGAGATACTGTGTTAAGTttagaagaagaaaataaattggTAGAATGGTGTATAAATTTAGCAAAGTGTGGCTTTCCTAGGAAAAAAGACGACCTATTAAATACAGTTAAAATGATAATAACTGAAGATAAAAGAGAAAACCCATTTATTGATGACAGACCTGGAAGAAAAtggtacaatttatttttaaaccgaCATCCGGAGTTAGTCCATAGAACTCCTGAAGGTTTGTCGAAAGGGAGAGCAATTATCACTGAGGAGACTATTAGAAAATGGTTTCGtgaattagaaaattatttgaaagaaaTTGGCGCCGATGATATTATACTTGACccaaaaagaattttaaatggGGATGAAACTAGTTTTAGTATCTGTCCAAAAACAGGAAAAGTCATTGCTCCCAAAGGttggaaaaatatttatgaagtaCAGAAAGGAAATGAAAAGGAAACTATTACTGTACTATTGGTATTTACAGCAGCTGGAGACACTGTACCTCCTATGGTTGTTTTTCCTTATGTAAGGCCCCCGAAAGATATTATAAATAGTATGCCACATGATTGGTTTTTGGGAAGATCAGAAACAGGCTGGATGAAAAGTGAGACTTTTTATGAGTATATAGTCAATGGTGTGAATGTGTGGCTAACAGAGAAATTGATTAAAAAGCCAGTGCTGTTACTAATAGATGGTCACAAATCCCATGGTCCTTAA
- Protein Sequence
- MPKTLKRPILQYKREAVQNAILAIRKDNISIREASRRYGVPRGTLQDRLHGRVSENTSKMGRDTVLSLEEENKLVEWCINLAKCGFPRKKDDLLNTVKMIITEDKRENPFIDDRPGRKWYNLFLNRHPELVHRTPEGLSKGRAIITEETIRKWFRELENYLKEIGADDIILDPKRILNGDETSFSICPKTGKVIAPKGWKNIYEVQKGNEKETITVLLVFTAAGDTVPPMVVFPYVRPPKDIINSMPHDWFLGRSETGWMKSETFYEYIVNGVNVWLTEKLIKKPVLLLIDGHKSHGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00903036; iTF_00271030;
- 90% Identity
- iTF_00903036;
- 80% Identity
- -