Lhae024048.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_963971575.1
- Location
- OZ020613.1:60115027-60129425[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.5e-12 4.3e-09 37.8 0.0 1 39 257 296 257 300 0.90 2 4 1.4e-10 7.2e-08 33.9 0.1 2 39 312 349 311 352 0.93 3 4 5.6e-16 2.8e-13 51.2 0.0 2 45 367 411 366 411 0.97 4 4 0.04 20 6.9 0.2 1 13 418 430 418 430 0.92
Sequence Information
- Coding Sequence
- ATGGGAAGAGGAGAAGGGGGGAGGTCTCTATTAAGAACTGCAGAccagttaaaaataaaaggattGTGTGAAGTATCGGAAGAAAAAGAACCACCACCAGTAGAAGAATTAGAATCACCAGTCTCACCGAGAAtagtatcaaaatttaaaagatttcAAACGAAAAGACCAAGATCGTTAGAATCATTAAGAAGACATGACAGCAAAGCACCAAGATTAACAGACAAAGACGATGATGACAGATCACTAATAGACGAGAAACTAGAGCACGCAAACGGACAAAACAAAATGACTGGACATAGTTTATTACCCGCTCAAGCTTTATTCCCTCAACTCTGTGTAGATAATGAAGAATTCCCTCCCGAGCCGCCTGGTCCGGCGGCCACACCAGTTAGACATATTGAAATGAGCCACGAATGTTCTCCACCTAGGACGTTACTTACAAATACAGACTCCTCGCAGAGGGGGGAGTTAATAGAGACTAATCTAGGACATGAACcgttagttaaaataaaattggaaacgTTAAAATCGAGCGACTCAGGGGATAATATGGATGTTGAAAGTCATATGTCAAGTCATTCAATAGGAAGTCATGGGAGTGAAGATGAACAAGGAATGCATACCATGATGATTACACCTGAACTTATGGGGTTAATTCCAACATCATCGTTACATGCAGAGATGAATGATGACGGGTCAAATACAAGCAACGGTCATATAAAGACAGAGCACCACCACAGACATTCCAATGGACCTAAGACATGGACCCAAGAAGATATGGACGTTGCTTTAGAAGCTTTAAGAAACCAAACAATGAGCCTTACAAAGgCTTCTGCATATTACGGTATACCATCAACAACACTTTGGCAACGGGCGCACAGGTTAGGAATTGATACTCCTAAGAAAGATGGACCTTCAAAATCCTGGTCAGATGAGAGTCTACACTCAGCTTTAGAGGCCTTAAGGACAGGAACAATATCGGCAAACAAGGCCAGTAAAACTTTCGGCATTCCCAGCAGTACCTTGTACAAAATAGCGAGACGTGAGGGAATTCGTTTAGCAGCTCCCTTCAATGCGGCACCAACAACATGGTCTCAGGACGATTTGGAGAAGGCACTGGATGCTATCAGATCAGGAACGACATCTGTACAGAGGGCATCTACAGAATTTGGCATTCCATCAGGCACGCTATACGGCAGGTGTAAAAGGGAGGGCATAGAATTATCTAGGTCGAATCCAACACCTTGGTCGGAGGATGCTATGACGGAAGCACTGGAAGCTGTTAGGTAA
- Protein Sequence
- MGRGEGGRSLLRTADQLKIKGLCEVSEEKEPPPVEELESPVSPRIVSKFKRFQTKRPRSLESLRRHDSKAPRLTDKDDDDRSLIDEKLEHANGQNKMTGHSLLPAQALFPQLCVDNEEFPPEPPGPAATPVRHIEMSHECSPPRTLLTNTDSSQRGELIETNLGHEPLVKIKLETLKSSDSGDNMDVESHMSSHSIGSHGSEDEQGMHTMMITPELMGLIPTSSLHAEMNDDGSNTSNGHIKTEHHHRHSNGPKTWTQEDMDVALEALRNQTMSLTKASAYYGIPSTTLWQRAHRLGIDTPKKDGPSKSWSDESLHSALEALRTGTISANKASKTFGIPSSTLYKIARREGIRLAAPFNAAPTTWSQDDLEKALDAIRSGTTSVQRASTEFGIPSGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -