Lnew004369.1
Basic Information
- Insect
- Liometoxenus newtonarum
- Gene Symbol
- salm
- Assembly
- GCA_030264535.1
- Location
- JARJEB010007015.1:5479-8463[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.8 3e+02 2.5 0.1 2 23 6 27 5 27 0.91 2 13 0.72 56 4.8 1.1 1 23 487 510 487 510 0.86 3 13 0.18 14 6.7 1.0 1 23 643 665 643 665 0.93 4 13 0.0015 0.12 13.2 2.7 2 23 668 689 667 689 0.97 5 13 2.8e-05 0.0022 18.7 6.3 2 23 724 745 723 746 0.95 6 13 0.026 2 9.4 0.3 1 23 756 778 756 778 0.95 7 13 0.00029 0.022 15.5 3.4 2 23 784 806 783 806 0.96 8 13 0.2 16 6.6 0.1 2 23 822 842 821 842 0.95 9 13 4e-05 0.0031 18.2 1.3 1 20 848 867 848 870 0.93 10 13 5.1e-05 0.004 17.9 0.3 1 23 878 900 878 900 0.99 11 13 0.00087 0.068 14.0 3.7 1 23 906 928 906 928 0.98 12 13 6e-07 4.7e-05 24.0 3.3 1 23 934 956 934 956 0.98 13 13 0.00081 0.063 14.1 7.5 1 23 962 984 962 985 0.96
Sequence Information
- Coding Sequence
- ATGGAAGGGACTATAGTCTGTCCGGTGTGTACATTATATCTGCGTCCAGGAATGACCTTAAAATCCCATTTGGAATCGCATCCGAAGCAGAAGGTCATCGAAGCCTTGGTGAAACTACATTCCGATTGTGAACCGAATAAAGATGCATCATCGATTGAAACAAGTTCCTGCCCTGTAACCGCTAGCGAACAACAACAATTGCAACAACCACCGGTACAACAAATACCATGGATGGGACAAAATGGAGGTGGTGCACCATCACCAGTGGGTTTTGGTCATGTTGGTCAATTACCAGCAGGATCGGGGGGACAAGTACCATCTGCTCATGTCCCCGTCGGCGCCGGTACAGGtaatcattcatttttctatCAACAATTTATGAGCTCGTCGACCCCACAACCCGGTTACGTCAATCAACAGTACGTCACGATACCGATTTTCAATCACCAACAAATGCTGCCACAATACGTGTATCAACAGCAGCAGGTTTTCGTTACTTCCGGAGGAGTTGGTGGTGGTGCTaatggtggtggtggtggtggattACCACGACTGATGCCTTGTCCTGATCCAGGTCCTGGATTGataaacaacaatcaacaaccACCACATATTGTTGAAATCCACGATAATGATAATGACGTGGAAGCGGTGGTAACTGAGAGCATTAAAGACGACCAGGTGAAAGCTGATCAAGCTGCACCAGGAATGCCCCAATTGGAAAATCAAGTTGTTTTCGTCgaaaatattatacaacatTGCGATAACAATGACTTTACTGCAGAGATAGTTGTGCCAGATGCTGAGGAAGATGTGGATTTGCATAAATCTTGTCAAACGACGCAAACACTACCGGCTACTGATGAACAAGTCGAACCGCCGCAATTGCAACCAGAGGTATTGTTAGATCCGCTGGAAGAGAAACACATCGAAATGGATGTGGAAACTGGAGCGAAGTATATTACGCTGACGAATCACGCGGTGGATTCGCGATTGGAAAATGGTGGCGAAGGTGATCATCACGCTTTCGATATGGACGGAATGAATCTCATCCTCGGGCATGAATTCATACAAGGGCAGAATCATATCGAAGACTTCGACGCATACAAATACGAACGCCCCAGGATTCTCATGAATATCGGTGAGTTTGATAATCGCGACGAAAATATATCAATTGATAGCGCGAATATTCGCGCCGATGAAAATATGCCGGCAAGAGGGGAGCTTTCCGGGCAGGAGAGTAATGCTAGTGATGTAGCTTCATGGTCCCGGTTGCAGTACAACGAGGGCAGTTCCCGAATGTCCTCCACCTACGATTTATTGGCGCGTGAAAGTTGGGAGGGTTCCGATGCGTCGTTAGATGTGGATGCACCGCCGCCGTACCAAAGCCGCAATCCACCATCATTCGATGAAGACGATGATCCTGTGATTTCGGGCAGTTCACGACAGGGTATCGAATACAAGTGTTCCTCATGCGATTTAAGCTTTATTTGTCCGAAAGAACGTCGTGTGCATCAGGCGGAAGTGCATGTCGCTGCTACGGCGGCGACGGCGGCGACacaatcaacatcaacaacgcAAACGACTAATCTAGACACTAGTAACGTAATAGGTTCGcaattatttaagaaaaaaattaaaaagttagtCATCAAACCGAAACAAACTCAACAAAATATGCTAAAGACTGAAAAGATCGAAGAGAGTCCTTTCGATCACATCTTCAATAACATTATGAAAATGGAGGTGGAGGGCGGTAAGACTGAAGGTGGTGGCAGCGAGACGGCGATCGAAGCGGCGGCAACGAAATTGTTGCCCGCATCGCAACCGATCATCATTTGCGTGCTCTGTTGCGCGGTTATCAAAGATACGAGCACATTGAAGCAGCATCAAGTCGCCGCACATGATTTCAAATTGGATACGAAGTACAAATGTGGTGTGTGCAATGAAGCATTTACCTGCGAGCCGAAGTACACCGAACATCTAACTGTCCATCCGTTGGAGTGTCAGTTTTGTGGCAAGTATTTCTATCGCGGGCATAATATGCAATTGCATATTAAACGTCATATGGGCATACGTCCGTTCAAGTGCATTTCGTGCGAGAAAAACTTTCTCACACGACAAAAACTACAAGAGCATCGACACGTACACACTGGGGAAGCACCGTTAAAGTGCAATATGTGCAACGAGACGTTCAAACGGCATTCGAATCTCATACAGCATCGCAATCGGCATCATTTAATGGTGAAGAAGAAAGTTAAGGATTTCATTTGCGCCGCATGCGGTGAGATTTTTCATTCGAAGAAGAAACTCGCTTGGCACAAAGAAATCCATGAGAATAAGCCGAAGAGTTGTGTGCATTGTAGCGAAAAGTTTATCCATGCGTCGAGCTTAACGCGACATGTACGTCGTGCGCATAACGAACGCTTTGTACCGGAAGAGGAACGTGATCGCGAGAATGTTGAATGTCCGATTTGTAAAGGTATCTATTTGCGTAGTTCGCTCGAAACGCATATCAAAAATCATAGCGGCACCAAGAATTACACGTGTTCGGTGTGCGATAAGGATTTCACCACCAAATGGAATCTCAAATTGCATAAGTGGACGCATGCGGGACGCGCACAAAAACCGTACAAATGTGAATTGTGCAAGGGGGCGTTTGTTCGCGAATCGGATTATACGGCGCACATGAATTCGCACAAGTCGATACGACCGTACACGTGCAATTATTGTGGGGCGCAATTTATACGCAAATATAATTGTCAACGTCATGTCAAGGAGCATGAACGTGTGAAGACATTTTCGTGCACCGTCTGTGGGAAAACCTTTCATCGATCGTACTATTTGAATGATCACATGCGTATTCATAGCGGCATTCGACCATTTTCCTGTCACATTTGTGGCAAAACTTCGACTACGAAAAGCAATCACAATAAACATGTACGGATACATCATGCACGTGAACCTGTTAGTACGGAAAACTAA
- Protein Sequence
- MEGTIVCPVCTLYLRPGMTLKSHLESHPKQKVIEALVKLHSDCEPNKDASSIETSSCPVTASEQQQLQQPPVQQIPWMGQNGGGAPSPVGFGHVGQLPAGSGGQVPSAHVPVGAGTGNHSFFYQQFMSSSTPQPGYVNQQYVTIPIFNHQQMLPQYVYQQQQVFVTSGGVGGGANGGGGGGLPRLMPCPDPGPGLINNNQQPPHIVEIHDNDNDVEAVVTESIKDDQVKADQAAPGMPQLENQVVFVENIIQHCDNNDFTAEIVVPDAEEDVDLHKSCQTTQTLPATDEQVEPPQLQPEVLLDPLEEKHIEMDVETGAKYITLTNHAVDSRLENGGEGDHHAFDMDGMNLILGHEFIQGQNHIEDFDAYKYERPRILMNIGEFDNRDENISIDSANIRADENMPARGELSGQESNASDVASWSRLQYNEGSSRMSSTYDLLARESWEGSDASLDVDAPPPYQSRNPPSFDEDDDPVISGSSRQGIEYKCSSCDLSFICPKERRVHQAEVHVAATAATAATQSTSTTQTTNLDTSNVIGSQLFKKKIKKLVIKPKQTQQNMLKTEKIEESPFDHIFNNIMKMEVEGGKTEGGGSETAIEAAATKLLPASQPIIICVLCCAVIKDTSTLKQHQVAAHDFKLDTKYKCGVCNEAFTCEPKYTEHLTVHPLECQFCGKYFYRGHNMQLHIKRHMGIRPFKCISCEKNFLTRQKLQEHRHVHTGEAPLKCNMCNETFKRHSNLIQHRNRHHLMVKKKVKDFICAACGEIFHSKKKLAWHKEIHENKPKSCVHCSEKFIHASSLTRHVRRAHNERFVPEEERDRENVECPICKGIYLRSSLETHIKNHSGTKNYTCSVCDKDFTTKWNLKLHKWTHAGRAQKPYKCELCKGAFVRESDYTAHMNSHKSIRPYTCNYCGAQFIRKYNCQRHVKEHERVKTFSCTVCGKTFHRSYYLNDHMRIHSGIRPFSCHICGKTSTTKSNHNKHVRIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -