Basic Information

Insect: Liometoxenus newtonarum
Gene Symbol: -
Assembly: GCA_030264535.1
Location: JARJEB010006727.1:6887-7840[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.6e-06 0.00036 21.2 2.6 1 23 15 37 15 37 0.98

2 9 0.00022 0.017 15.9 5.3 2 23 44 66 43 66 0.97

3 9 0.19 15 6.7 2.3 2 22 74 94 74 94 0.92

4 9 1.7e-06 0.00013 22.5 0.3 2 23 101 122 101 122 0.98

5 9 2.9e-06 0.00022 21.8 1.0 2 23 129 151 128 151 0.95

6 9 4.6 3.6e+02 2.3 1.6 3 21 169 186 168 188 0.69

7 9 4.8e-07 3.8e-05 24.2 1.5 1 23 194 216 194 216 0.99

8 9 0.00092 0.072 13.9 0.1 5 23 224 243 221 243 0.91

9 9 0.0097 0.76 10.7 6.3 1 19 275 293 275 296 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.6e-06	0.00036	21.2	2.6	1	23	15	37	15	37	0.98
2	9	0.00022	0.017	15.9	5.3	2	23	44	66	43	66	0.97
3	9	0.19	15	6.7	2.3	2	22	74	94	74	94	0.92
4	9	1.7e-06	0.00013	22.5	0.3	2	23	101	122	101	122	0.98
5	9	2.9e-06	0.00022	21.8	1.0	2	23	129	151	128	151	0.95
6	9	4.6	3.6e+02	2.3	1.6	3	21	169	186	168	188	0.69
7	9	4.8e-07	3.8e-05	24.2	1.5	1	23	194	216	194	216	0.99
8	9	0.00092	0.072	13.9	0.1	5	23	224	243	221	243	0.91
9	9	0.0097	0.76	10.7	6.3	1	19	275	293	275	296	0.97

Sequence Information

Coding Sequence: ATGGACACCCATTTGGCAGGTTTAGATAGGAAATCAATTGAATTTGAGTGCTGTTGGTGTGATAAAGCTTTCAAAGGCAAAGATTATCTTCGATATCATATGCTTACTCATATTAACGAAACACAAGTAGAATGCGAACATTGTCATAAATTGTTTGCAAGCAAACATTTCCTTGTCACGCATATGCGTAGAGTGCACACTGAAAATGCGAAATACGAAAAATGCGAGTCATGCGGGGAAAAGTTCAGATACTTTCgggaaataaaattacatactTGTACTGGACTACCTTTGATAAGAACATGCACTATTTGTGGTAAGGTATTTACTGGTAAGGCTTCTTTTGACGATCATATGAGAGTGCACGCAAATCATGGACGGATTATGTGTCCTACTTGTGGCAAGTGTTTTGCTCGTAAGGGTGCGTTGGTACACCATGAAAAAATAGTGCATCAAGGAATTAAGAATCCTTATATTGGAAAGAAAAACCGAAAGAAGGCAATTTGCGAATTGTGTGGGAAAGAATATTACGTTGATTACATGCCATCACATATGAATCATCACAACAATATTAGACCGTTTCAATGCACGGTATGCGAAAAGGGATTTTTTACTAAAGTTTCGCTTACGAAACATATGAAGGTGCATGAGGGTAAGGTTCCTTGCATTCAATGCGAGAAGACCTTTACGAATCCTCTTGCTTTAGCAAGACATATTAATTTATCACACAAAGTTGATGATCTGAAAGGTACGAAAAAGAAAGTGACGAATACGAATGGAGATAAGGATAAGAAAGAGATGGTACCAATCAGTGAGAAACGTTATTCGTGTTACACATGTGGCAAACATTTTGCCAAAAATGCTTACTTAACCAAACATTGTTGTGTGGCAGTTGATCTTACAACACACAATGTAGTTCATCCAGTTGATCCTAATTTTACTTGCGCCGAATGA
Protein Sequence: MDTHLAGLDRKSIEFECCWCDKAFKGKDYLRYHMLTHINETQVECEHCHKLFASKHFLVTHMRRVHTENAKYEKCESCGEKFRYFREIKLHTCTGLPLIRTCTICGKVFTGKASFDDHMRVHANHGRIMCPTCGKCFARKGALVHHEKIVHQGIKNPYIGKKNRKKAICELCGKEYYVDYMPSHMNHHNNIRPFQCTVCEKGFFTKVSLTKHMKVHEGKVPCIQCEKTFTNPLALARHINLSHKVDDLKGTKKKVTNTNGDKDKKEMVPISEKRYSCYTCGKHFAKNAYLTKHCCVAVDLTTHNVVHPVDPNFTCAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -