Lnew019469.1
Basic Information
- Insect
- Liometoxenus newtonarum
- Gene Symbol
- -
- Assembly
- GCA_030264535.1
- Location
- JARJEB010031148.1:2830-4645[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.1 3.2e+02 2.5 0.4 13 23 140 150 138 150 0.91 2 11 6.3e-05 0.0049 17.6 2.6 1 19 156 174 156 179 0.90 3 11 1.2e-06 9.3e-05 23.0 0.5 1 23 185 207 185 207 0.98 4 11 0.00017 0.013 16.3 0.2 1 23 213 236 213 236 0.93 5 11 4.3e-06 0.00033 21.3 0.5 2 23 243 264 242 264 0.97 6 11 0.0025 0.19 12.6 3.3 1 23 270 292 270 292 0.97 7 11 6.8e-07 5.3e-05 23.8 4.0 1 23 300 322 300 322 0.99 8 11 0.0068 0.53 11.2 1.9 1 21 328 348 328 351 0.93 9 11 1e-05 0.00081 20.0 3.3 1 23 357 379 357 379 0.97 10 11 2.4e-05 0.0019 18.9 0.6 1 23 385 407 385 407 0.99 11 11 0.035 2.7 9.0 0.6 1 10 415 424 415 425 0.96
Sequence Information
- Coding Sequence
- ATGGAATACGAGAAAACTAGCCGAACTGAGGAAATGATTATTTTCTCTACAGAAAATATAATTCAGGAAAAAATACTTCAAGAAGGAACGGAAAATGGGGAAACTatcaaaaataacgaaattactaattttacgGAAACTATAAATGAAGGTAGAAAACGTTCTGAAGAAGTAGAAAGGGATAATGCAGCTGATAATGAAAAGGACAATGCAAACGATGAAAGCAGTATTTTTGATTCAGATACTGATGCTGATTATAATATTGATAATGATTCTGATTCAAATACAGATTCTAATAccgaacaagaaaaaaaacaaaatCACGTGCACATTTACGAATTCATCAACCTAGTCACTCCAGTGCTAGGCCCTTTGCTTGCCAACAATGCGGCAAAGCATTTAAATTGGcaaaaagCTCGTTCTACTTTGAAAATACATCAAAGTACTCATTCCAACGATAGACCCTTTAATTGTCAACATTGTGGTAGGGCATTTAAATCGAGATATCTATTAAAGAACCACGATAGACTGGAACATGCACCAGAGAAAGCACACAAATGCGAAATATGCAACAAAGCTTTTCCaacCAGCGGGGGTTTGAAATTACATCAAGCTACTCATTCGGATGATAGGCCATTTATTTGTCAACAATGCggtaaaacatttaaaatggcaaaagtattaaaaaatcaCGAAGCAGTCATACATGCAACAGATAAAGCAgacaaatgtgaaatttgcaacaaatctTTTGGaaatcGTAGGGCTTTAAAAATACATCAAATTAGTCATTCGAATGATACGCCCTTCACTTGCCAACATTGCGGCAAAGCATTTAAGTGGGCATGTGTATTAAAAGTTCACCTAACGACCCATGCAAAAGAGAGGCCAAGGCCAtacaaatgcgaaatttgcaacaaagcTTATAGaacCAGTACGCATTTGAAAGAACATAGAAGATCTCATTCCAGTGATAGACCCTTTATTTGTCAACAATGCGGGACGGGATTTAAATCGAGAGGTGTGTTAAAGGATCACGAAAGATGTCGACATGCAACTGAGAGACCacacaaatgcgaaatttgcaacaaatctTTTGTaaCACGTACGTTGTTAAAGCAACATAAAACTATTCATTCGAATGATAGGCCCTTTACTTGCCAGCAATGCGGCAAAGCATATAAATTGGAAAGTGTATTAAGAGTTCACCTAAAGACCCATACAAAAGAGAGGCCAAGGCCAtacaaatgcgaaatttgcaacaaatcttttatgtaa
- Protein Sequence
- MEYEKTSRTEEMIIFSTENIIQEKILQEGTENGETIKNNEITNFTETINEGRKRSEEVERDNAADNEKDNANDESSIFDSDTDADYNIDNDSDSNTDSNTEQEKKQNHVHIYEFINLVTPVLGPLLANNAAKHLNWQKARSTLKIHQSTHSNDRPFNCQHCGRAFKSRYLLKNHDRLEHAPEKAHKCEICNKAFPTSGGLKLHQATHSDDRPFICQQCGKTFKMAKVLKNHEAVIHATDKADKCEICNKSFGNRRALKIHQISHSNDTPFTCQHCGKAFKWACVLKVHLTTHAKERPRPYKCEICNKAYRTSTHLKEHRRSHSSDRPFICQQCGTGFKSRGVLKDHERCRHATERPHKCEICNKSFVTRTLLKQHKTIHSNDRPFTCQQCGKAYKLESVLRVHLKTHTKERPRPYKCEICNKSFM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -