Lnew020951.1
Basic Information
- Insect
- Liometoxenus newtonarum
- Gene Symbol
- ZFX
- Assembly
- GCA_030264535.1
- Location
- JARJEB010033407.1:860-2488[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.3e-05 0.0018 19.0 1.8 1 21 158 178 158 182 0.91 2 9 3.7e-05 0.0029 18.3 0.2 2 23 189 209 188 209 0.97 3 9 4.5e-06 0.00035 21.2 0.9 1 23 215 237 215 237 0.98 4 9 2.7e-06 0.00021 21.9 0.9 3 23 245 266 243 266 0.95 5 9 1.8 1.4e+02 3.6 0.4 7 23 285 301 285 301 0.89 6 9 5.2e-06 0.0004 21.0 0.2 1 23 308 330 308 330 0.98 7 9 5e-06 0.00039 21.0 2.5 1 23 336 358 336 358 0.98 8 9 4.4e-06 0.00035 21.2 1.8 1 23 364 386 364 386 0.98 9 9 2.5e-05 0.002 18.8 7.1 1 23 392 414 392 414 0.98
Sequence Information
- Coding Sequence
- ATGGAtgtgaatgaaataattatactaAGTCAAAAGGATAAAGACATAAAAGTACCGACCTTTGCGGACTTTATCAAAATTTGTCGAGTTTGTCTCAATGACATCACTGAGCCTGAtagttgcaaaaatatttacgaagAAGAATGCAAGATGAGAATAAAAACCTTGTTGGAAGTTTACGCTTACGCTAAGATTCCTAAAACACAAGATTCGTTACCGCAAAATATTTGTTCCGAATGCGCCGCCTTCTTGATAGAAATCCACATATTTCGAAGTCGCTGCAAAGTAAACGAAAATTTACTtagtaaaatacaaaaaaaagctaaagaaAGCGTCGAAGCAATACAAGTACGGCACAGCTATGCGAACATGGATACTTCCAACTCGGAAACAGGTTTCAATGATGTCGATAATCTCAGCTTCAGACAAGAACAAATTTACGCGCATATAAACGAAGAACGGATGGGTCTGTTTAAATGCAAGGATTGTCATTTGGTGTTTAGTGACAAGAAAGAGCTGTATGCTCATCGAATGGAAGCCAAACATTCACGACGACCGGGTAGCCCGTGTCCATATTGTGGTCGGCTGTTCAATTCGACGACGTTAATTCAACATATTCGAACGCATACCAAAGAAAAGCCGTACACCTGTGAATTCTGTAATGCTTCGTTTTCGAATAAAAGCAATATGGATAGACATGCAAGGGTGCACAGTGTAGATGGATTGCAAATTTGTGAAATGTGCGGAAAGACTTTTACACAGTTGGGGACTTTGAGGCAACACCAGAAGCAACAACACAATGACGAAGGGAAGAAAAACGATCCGAAGAAGACTGTAGGGTGCGCGCTGCGGGGAAAAGTATATCACAGCGACAACTTACTGAAGATGCACATGAGGGCTCACAGAAAGACGTCGAAAATGTTTATGTGCGCTATTTGCGAGAAGGTGTTTTCGATGAAATCTGTTTTGAAAGAACATATTCGCgtgcatacaggtgaaaaACCTTTCGTATGTGCAGTTTGTAAACGTTGTTTCGCCCAGTTATCAAccctccgcactcacatgaCAACGCATACCGGCGAAAAGCCGCACAGATGTGTTCACTGTGATCGCCGGTTTGCTGTCCGCGGAAATTTAATAGCACACCAACGGATCCACACCGGCAAATCGCCTCACAAGTGTACGATTTGCAACCAAAGCTTTTATCATTCCAGCGCCTTAAAGAAGCATTTTCGTTCTCATAACACGGTAGAATTATTTCAGACACAATTCGTTCAagtagaagaaaaagaaaaacatgaaCTAGATGAAGAAATTGCAGTTCGAGAGGAACTGCAACAAGCTACGGAAATGTTGAAAGTAGATCTTGGTATTGAGTACGTAACAGAGGAAGGAATCGTCATTGAAAATCATGAAGAAGAAGACGACAATGTATATTACTTAGAGATGGAAGATGACGCTCCGGAAAATACATAA
- Protein Sequence
- MDVNEIIILSQKDKDIKVPTFADFIKICRVCLNDITEPDSCKNIYEEECKMRIKTLLEVYAYAKIPKTQDSLPQNICSECAAFLIEIHIFRSRCKVNENLLSKIQKKAKESVEAIQVRHSYANMDTSNSETGFNDVDNLSFRQEQIYAHINEERMGLFKCKDCHLVFSDKKELYAHRMEAKHSRRPGSPCPYCGRLFNSTTLIQHIRTHTKEKPYTCEFCNASFSNKSNMDRHARVHSVDGLQICEMCGKTFTQLGTLRQHQKQQHNDEGKKNDPKKTVGCALRGKVYHSDNLLKMHMRAHRKTSKMFMCAICEKVFSMKSVLKEHIRVHTGEKPFVCAVCKRCFAQLSTLRTHMTTHTGEKPHRCVHCDRRFAVRGNLIAHQRIHTGKSPHKCTICNQSFYHSSALKKHFRSHNTVELFQTQFVQVEEKEKHELDEEIAVREELQQATEMLKVDLGIEYVTEEGIVIENHEEEDDNVYYLEMEDDAPENT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -