Basic Information

Insect: Liometoxenus newtonarum
Gene Symbol: -
Assembly: GCA_030264535.1
Location: JARJEB010024655.1:1825-5753[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.38 30 5.7 0.3 6 20 358 372 356 374 0.93

2 18 0.25 20 6.2 5.0 1 21 380 400 380 403 0.88

3 18 0.5 39 5.3 0.7 1 23 428 451 428 451 0.96

4 18 0.00079 0.062 14.1 1.9 2 23 507 529 507 529 0.94

5 18 0.00044 0.034 14.9 0.2 2 23 538 559 537 560 0.94

6 18 0.015 1.2 10.1 0.9 1 23 562 584 562 584 0.97

7 18 0.0002 0.016 16.0 1.0 2 23 604 625 604 625 0.96

8 18 0.0042 0.33 11.8 0.7 2 23 646 668 645 668 0.95

9 18 0.077 6 7.9 0.0 3 23 685 705 684 705 0.97

10 18 3e-07 2.3e-05 24.9 3.6 1 23 727 749 727 749 0.99

11 18 0.013 0.99 10.3 4.9 1 23 760 782 760 782 0.98

12 18 4.1e-06 0.00032 21.3 0.6 2 23 791 813 790 813 0.96

13 18 0.0055 0.42 11.5 0.1 1 23 820 842 820 842 0.94

14 18 0.49 38 5.4 0.9 1 23 888 911 888 911 0.92

15 18 0.0027 0.21 12.5 0.5 2 23 920 941 919 941 0.97

16 18 0.00013 0.01 16.6 2.4 2 23 961 983 960 983 0.96

17 18 0.00032 0.025 15.4 0.8 2 23 995 1016 994 1016 0.97

18 18 0.00036 0.028 15.2 0.0 1 23 1032 1055 1032 1055 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.38	30	5.7	0.3	6	20	358	372	356	374	0.93
2	18	0.25	20	6.2	5.0	1	21	380	400	380	403	0.88
3	18	0.5	39	5.3	0.7	1	23	428	451	428	451	0.96
4	18	0.00079	0.062	14.1	1.9	2	23	507	529	507	529	0.94
5	18	0.00044	0.034	14.9	0.2	2	23	538	559	537	560	0.94
6	18	0.015	1.2	10.1	0.9	1	23	562	584	562	584	0.97
7	18	0.0002	0.016	16.0	1.0	2	23	604	625	604	625	0.96
8	18	0.0042	0.33	11.8	0.7	2	23	646	668	645	668	0.95
9	18	0.077	6	7.9	0.0	3	23	685	705	684	705	0.97
10	18	3e-07	2.3e-05	24.9	3.6	1	23	727	749	727	749	0.99
11	18	0.013	0.99	10.3	4.9	1	23	760	782	760	782	0.98
12	18	4.1e-06	0.00032	21.3	0.6	2	23	791	813	790	813	0.96
13	18	0.0055	0.42	11.5	0.1	1	23	820	842	820	842	0.94
14	18	0.49	38	5.4	0.9	1	23	888	911	888	911	0.92
15	18	0.0027	0.21	12.5	0.5	2	23	920	941	919	941	0.97
16	18	0.00013	0.01	16.6	2.4	2	23	961	983	960	983	0.96
17	18	0.00032	0.025	15.4	0.8	2	23	995	1016	994	1016	0.97
18	18	0.00036	0.028	15.2	0.0	1	23	1032	1055	1032	1055	0.93

Sequence Information

Coding Sequence: ATGAATCTAGCAGTGTTTCCCAACTTCAATTCATGCTGCAGGCTTTGCTTGGTGGAGAAAACAAGTACCTTGAGCAACATCTACTCTTCGAGAAATGAATCTTGTGGAATTGTAGAAAAGATTTATTCTGTGACTGGAATAAAGattACATCGTCTGATAGAATCTCCACTAATCTTTGTGATAAATGCTTTTTATTGATCaacaattttgataatttcaaaACTAATTGCCTAGCAAATCAGCAGAAACTTACCAAAAGGCTTCATAACTTCGATGAGTTACTACTAAACGAAAGTATACAAATCAAAGATGAACCCCCAGATCAAGACGATGATGACGTTGTATTTGTCTCAAATGATGAAGAGATTTCTGTAAAGGTGGAAGTACTGCAACCACCCTTGGATATTACTGTTGATTGTAGAGAAGATGATCTTCCACCGTTGCTCTCTCCCAATTTACCTACAGCCGTCGAATTGCCTAATAATATTGAATCGAGTGTTGCGAATGAAGACTATATGGACGAATCCCAATCAGTTGATACAAATGATAACGAACAAGTAGAACCTGCAGGTGCTGAGcaaattattgaaggtcaaagaGAGAAAATTGATTTTGCTGCAGGTTTACAGTTGCAATCCAAAATTACAAGCAGTGTTAATCTGGAACCTATGACAAAGGCGGAATTGCAATATACCAAAAAGCACATTTTGATTTACTCACAATTTCAATCGCTTAGGTGCTCTTGTCACAATGAGAAATTGGTATCTCGCAAATCATTGCTTGCCCATGTGAAAAGGCACAATTCAACATATTTACCGCCATATTCGTGCCTTGCCTGCATTTCAACTTTGAATGGCCCCTCTGCTTATCATAAACATAAGTCAAaagaatgcaaaaaaaaggaatttgagggtttatatcaaatttttaatgcaGTAGAACGGGATGTAAACAAGCACCGTTCGTATCAAATGTTTACATGCGAGCCTTGTGGTAATCATTATCGAATATATGAAGAATATTGCAAGCATGCTGAGCGACACGTGCTGGAGTTAAATTTACATTGTTCGTGTGGCAAAGACTTTAATAATGCCACCGCATTTAAGCAGCATGTATACAATACTTGCCTTGTGAAGTACACTTGTGATATTTGCCATAAAAAATACGATACTGTTGAAGCTTTTAAAGAACATTGTACAACTTtccatgatgatgatgaagggCCCCAGTTTAATACCGAGAATGGATTTGTATTATACGAATTTCCAATTGAAACGCTTTATGCTTGCGTTGAATGCAATTTAAAATGCGCGAAATCCCAAGTAATGATTAAACATTTACAATCTGAACACATTTACGATGCCGAGACTGCGAAAAGGGTATCTGCCGATTGCTACATCGGACCGAGATCAGacgatgataataatattagtattaataataatggcAGCTCCGCTAAACAAACATCTTTACGTTCTTCATCAAAAACACGTGCATCAATTTCAAGTAAGAGTGCAGAGTGTGATATTTGCTCGAAAAGTTTTGGATCTCATTCTAATATGTTAAGGCATAAACAACAAGTTCACGATTTGAAACGGCGAGGTAACGTGCGTTGCGGTGACTGCAAAGAGAAGTTCGCGAATGTTGCTGAATTACAAGCTCATCTTGAATCTCATCATTCGTTCCCATGTGTTGAGTGCCGGACTAAATACAAAACTTTTGAAGAATTGGATAAGCATCGTAGTATTCATTTGAAAATCTCGTTGACTCGCGATCCTGCAACGTTGAAGTACCGAAGTAACTCACGTTCATGTGACATATGCAATCACAGCTTCCAAACTGAAGAAGAATTGAATCAGCACATGCAAGCACATGTTGAAGATATGCCCAGTCTGGAATCAGTTGAGCAACAAGATGTGAAAGATTTGAAAATGCAGTGCAAATTATGCAAACGCTTGTTCGCTACCAGGAGAGGTCTTAATGTTCATTTAGCTAAGCAACACCCCGAGGCAATTATACACAGAGACGAAGTTAATAATTTCCCCAAAATATGCGACGTTTGTGGAGAAACTATTCGCGACATTAATGCTTGGCTCCTACATATGAAGATGCACCCGCAGTCTACATCTGTATCGTCCAATAGTAATAGTCCAGCTCGTCCCGATGACACCGACTACTACACTtgcaaaaaatgtttcaagGTATTTGCGACAAAAAGTAATTATAGGCAACACATGAGAGTGCACGGTATTTTTATAAGTCCTCCGAAAAGTCGTTACTGCTGCAGCATATGCAAAGTTACATGCACAACACAAGCAGACTGgcttaaacataaacaaacacatGTTAAGAAAATCACAGAGAGTGTGTCTTGTAAATACTGTAAGGCCTCTTTTAATAGTAGTAGTGATTTAGAAAAACACATTCGTCAAGAGCATGAAATTACACTTGGTAAATTTGACTGCAATATTTGCGGCAAGAAATTATATTCAGTAGATAGTCTGCGGGGACATATAGGCTGGCATAAACGTCCATCAAAATACATGATTAATCCAACTAAGCCACCGCCACTAATTGGTATAGATGAAGAATCTCCAAAAGTAAATATGAATCCACCAAAACTGAACATCAATCCAAAGgatttgttcaaaaataaaacgtatGTTTGCATCACTTGTGGTGATCTTTTTCCTCATCATCAAGAACTACAGGCGCATATTAGTACTTCACATGGTAGTGTAGAAACAACTTCCGTACGTTGTGCTTCTTGTAATACATATTTCAGCAGTGCTACTGAGCTCAAAGAGCATGAAAAGACACATATTGCAAATAATATCAAACAGGATCCCGCTGGATCCGTAAGGAGGGGCAAAGTATCACAGTGTAAGACATGCTCTAAAATATTCCAAAGAACTGATCATTTACAAGCCCACATGGAAAAAGTGCATCCAGAATTGCTGCATCTTAAAAAGGGTTGTACCACATGCCCTTATTGTAAAATGAATTTCCAGAAACAGAATGCCCTTATTTCCCACATCAAAATGCATAAGCGAAGAAATGACAAATTACCATCAAAGCCAAttgattacaaatttaattgcagtatTTGTGGCAGAGGTTTCAATATACCGGCTGAATTAAGAAGTCATATAATCGCACAACATCCATTTTGA
Protein Sequence: MNLAVFPNFNSCCRLCLVEKTSTLSNIYSSRNESCGIVEKIYSVTGIKITSSDRISTNLCDKCFLLINNFDNFKTNCLANQQKLTKRLHNFDELLLNESIQIKDEPPDQDDDDVVFVSNDEEISVKVEVLQPPLDITVDCREDDLPPLLSPNLPTAVELPNNIESSVANEDYMDESQSVDTNDNEQVEPAGAEQIIEGQREKIDFAAGLQLQSKITSSVNLEPMTKAELQYTKKHILIYSQFQSLRCSCHNEKLVSRKSLLAHVKRHNSTYLPPYSCLACISTLNGPSAYHKHKSKECKKKEFEGLYQIFNAVERDVNKHRSYQMFTCEPCGNHYRIYEEYCKHAERHVLELNLHCSCGKDFNNATAFKQHVYNTCLVKYTCDICHKKYDTVEAFKEHCTTFHDDDEGPQFNTENGFVLYEFPIETLYACVECNLKCAKSQVMIKHLQSEHIYDAETAKRVSADCYIGPRSDDDNNISINNNGSSAKQTSLRSSSKTRASISSKSAECDICSKSFGSHSNMLRHKQQVHDLKRRGNVRCGDCKEKFANVAELQAHLESHHSFPCVECRTKYKTFEELDKHRSIHLKISLTRDPATLKYRSNSRSCDICNHSFQTEEELNQHMQAHVEDMPSLESVEQQDVKDLKMQCKLCKRLFATRRGLNVHLAKQHPEAIIHRDEVNNFPKICDVCGETIRDINAWLLHMKMHPQSTSVSSNSNSPARPDDTDYYTCKKCFKVFATKSNYRQHMRVHGIFISPPKSRYCCSICKVTCTTQADWLKHKQTHVKKITESVSCKYCKASFNSSSDLEKHIRQEHEITLGKFDCNICGKKLYSVDSLRGHIGWHKRPSKYMINPTKPPPLIGIDEESPKVNMNPPKLNINPKDLFKNKTYVCITCGDLFPHHQELQAHISTSHGSVETTSVRCASCNTYFSSATELKEHEKTHIANNIKQDPAGSVRRGKVSQCKTCSKIFQRTDHLQAHMEKVHPELLHLKKGCTTCPYCKMNFQKQNALISHIKMHKRRNDKLPSKPIDYKFNCSICGRGFNIPAELRSHIIAQHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -