Lnew018059.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Liometoxenus newtonarum
Gene Symbol
-
Assembly
GCA_030264535.1
Location
JARJEB010028891.1:13031-15430[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.67 52 4.9 0.4 1 21 8 29 8 30 0.92
2 16 0.0022 0.17 12.7 0.1 3 23 37 57 36 57 0.98
3 16 6.2 4.8e+02 1.9 0.1 1 12 141 152 141 155 0.88
4 16 0.012 0.91 10.5 5.6 1 23 295 318 295 318 0.98
5 16 0.00013 0.01 16.6 0.5 2 23 339 360 338 360 0.97
6 16 5.7e-05 0.0044 17.7 1.0 1 23 388 411 388 411 0.97
7 16 0.0017 0.13 13.1 1.6 1 23 418 440 418 440 0.98
8 16 0.081 6.3 7.8 2.8 1 23 478 499 478 499 0.96
9 16 1.8e-05 0.0014 19.3 1.0 1 23 505 527 505 527 0.98
10 16 0.0019 0.15 12.9 1.1 1 23 533 555 533 555 0.97
11 16 0.0001 0.0077 17.0 2.3 1 23 561 583 561 583 0.99
12 16 6.5e-06 0.00051 20.7 3.1 1 23 589 611 589 611 0.98
13 16 0.0002 0.016 16.0 4.0 1 23 617 639 617 639 0.97
14 16 3e-05 0.0023 18.6 0.5 1 23 645 667 645 667 0.99
15 16 0.0018 0.14 13.0 1.5 1 20 671 690 671 693 0.95
16 16 1.1e-05 0.00084 20.0 0.1 1 23 701 723 701 723 0.98

Sequence Information

Coding Sequence
ATGGAAGTAACACTAAAGGCATATAAATGCCCCTTGTGTTGTGAGGAAACATTTGAATCAATGATATTACTTCAGTCTCATCTGAAtcaattaattcctaaattattATGCCCTGAATGTAATAAGCCGTTTCTATCAATCTCTGACCTAAACAATCACTTAGAAATACATTTGCACTCAGCACTTCCGAAAAATAACATGAAAACGAGTCTGATTGATGGGATGCCGCAAATTATTGCTACCAATGGACATACtgataataatattgttaatacgaatttacaatcgaacatGCCATACGTTTCAGAAGATATATTTAATGAAGAACTTGTGGAAGAGGAGATCAGGGTcaattgtgatgaaatttCGCCGTTGGACCATCTGAAAGTTAATGGTAAGGGAGTGCTGgaaacagaaatatttacCTGTTCCAGCTGCAATATGGAATTCGCCGATATCGATGATCACTTGCAGATGTATCACAGCAGACAAGAAGTACTATTCAAAAATGAAGTAATAATACAAccagaaaagaaacaaacaccTCCTATAAATCAACCAATACCGGAAATACCTATAACGACTCCACAGCCACCAGTTCCTCCAGGCACCTTTATAGAATCACAAGAAATTGTTGATAGTAACGGGGCCAAATACACCAGAAAATTAGTACACATTGAAAAGTTCTGGGACAAAGAAGGTTACTATGATATAAATGGAACTACCTCAATTAAAATTACGGATTGCGTTGATGAAGGTGTTGATCTAAGCGAGCCTATTACCGGACCTATTCCTAGAATGTTATTTTGCACTGATTGCATCTGTGATTTCCAAGAGGAAGATTATATTGAACATGAATGTAAGAACGAAGATAAGTTGCGATACAAATGTACATTCTGCAAGGCGTCAtataatttcatcaaaaaCTTCCGTGCGCATATGAAGTCTTGCCACAAAGATGCCTACCACGCTCAATTAGTCCAGGGTACTAAACGTCGTCCTAGAGATATTAAAGTTTGCGATGTTTGCTCGGCTGAATTTACAACTAAAAGGGCATTTAATGTCCACCTGCGAACACATCAACCTACTCCTAAGAAGGCAAGGACCAAGAAAAAAACTACGAATGTAAATAATAACGAACAAGTTAaagaaactaaaatgtatCAATGTACTGTATGCGAAACGGTATTCAAAACAATTAGGACTCTCAGGAcacatttgaaaaatgttcataattGCAAAGAAGGACCATACACGTGCCTAGTTTGCAACACGGAGTTCGCTACTTACAAGTCTTTCACTTTACACTCGCGAATGCATTCGCATCCAGCGAGAGCACAAAAGATCGAGCCGCCTGTTCGATACGGTCTGTTGCCCGATGattCTGATGTTCTTGATTCACCTGATACCACTACCACTTCCCGTACAACATTCGCATGTAAATATTGTCATAAAGAATACGACGAGGAATACAGAAAATTGCATATGCAAGTGCATTCTGGTACAGAGAATTTTTACTGTGAAATATGCAACAGGAAATTCTTTAGCCAAAGCCTTTTGGATATGCACATGATGATCCATTCCAATGACAAGACTCATGTTTGTAAGTATTGCAAGCAAATCCTTGCCGATTACGACACTCTGCAGCAGCACATCAAAGATCATTTATCAACGCGTCCGTAtcaatgcaatttttgtgggCGCAGGTTCATTCGGCCACATGAAAAAGTCAAGCATGAGCGTATTCATACTGGTGAGAAACCACACGTGTGCGAATTATGCGGTAAGGCTTTCCGCGTAAGTTACTGCTTGACGTTGCACATGCGATCTCATTCGGGAACACGTCCGTATCCATGTAACATATGCTGGAAGCGATTCAAGTCGCATAGTGTTTACAATCATCATATGTTGTTGCACCAAGAAACCAGAAATTTTAAATGCCCGTACTGTGAAAAGTTATTCAAAACTGCTGTACAATTAGCTGGACATAAGAATACGCACACGAAGCCGTTTACATGTACAGATTGCAACCGGCCGTTTGCATCGTTGTATGGTGTCCGGACTCATATGGAGTGTCACAGAAGAgacaacaatttgaaattcaattgCGAGATATGCGGCGCTAGCTACGCCCGTGCTTTCGCCCTCAAGGATCATATTAAAACGCATCAAGCGACTGAATGGATTGATCCAAATATTGTTATTGACTTAAATCAAGTCTTGATCATCGATGATAATGTGGATCTTATGATGGATGTTGAAACGACTTATGCCGGCGAATGA
Protein Sequence
MEVTLKAYKCPLCCEETFESMILLQSHLNQLIPKLLCPECNKPFLSISDLNNHLEIHLHSALPKNNMKTSLIDGMPQIIATNGHTDNNIVNTNLQSNMPYVSEDIFNEELVEEEIRVNCDEISPLDHLKVNGKGVLETEIFTCSSCNMEFADIDDHLQMYHSRQEVLFKNEVIIQPEKKQTPPINQPIPEIPITTPQPPVPPGTFIESQEIVDSNGAKYTRKLVHIEKFWDKEGYYDINGTTSIKITDCVDEGVDLSEPITGPIPRMLFCTDCICDFQEEDYIEHECKNEDKLRYKCTFCKASYNFIKNFRAHMKSCHKDAYHAQLVQGTKRRPRDIKVCDVCSAEFTTKRAFNVHLRTHQPTPKKARTKKKTTNVNNNEQVKETKMYQCTVCETVFKTIRTLRTHLKNVHNCKEGPYTCLVCNTEFATYKSFTLHSRMHSHPARAQKIEPPVRYGLLPDDSDVLDSPDTTTTSRTTFACKYCHKEYDEEYRKLHMQVHSGTENFYCEICNRKFFSQSLLDMHMMIHSNDKTHVCKYCKQILADYDTLQQHIKDHLSTRPYQCNFCGRRFIRPHEKVKHERIHTGEKPHVCELCGKAFRVSYCLTLHMRSHSGTRPYPCNICWKRFKSHSVYNHHMLLHQETRNFKCPYCEKLFKTAVQLAGHKNTHTKPFTCTDCNRPFASLYGVRTHMECHRRDNNLKFNCEICGASYARAFALKDHIKTHQATEWIDPNIVIDLNQVLIIDDNVDLMMDVETTYAGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-