Lnew004178.1
Basic Information
- Insect
- Liometoxenus newtonarum
- Gene Symbol
- insm1a
- Assembly
- GCA_030264535.1
- Location
- JARJEB010006727.1:1-3846[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00018 0.014 16.1 4.6 1 23 21 43 21 43 0.98 2 18 0.0013 0.1 13.4 2.8 2 21 50 69 49 72 0.94 3 18 0.26 20 6.2 4.1 2 22 79 99 79 99 0.94 4 18 0.015 1.2 10.1 0.8 2 23 106 127 105 127 0.97 5 18 2.3e-05 0.0018 19.0 2.4 2 23 134 156 133 156 0.96 6 18 3.8 3e+02 2.5 1.1 3 22 174 192 173 193 0.72 7 18 0.00052 0.04 14.7 4.0 1 23 199 221 199 221 0.98 8 18 8.2e-07 6.4e-05 23.5 0.2 1 23 225 248 225 248 0.97 9 18 0.0026 0.2 12.5 5.6 1 23 286 309 286 309 0.89 10 18 0.00018 0.014 16.1 4.6 1 23 341 363 341 363 0.98 11 18 0.00026 0.02 15.6 2.8 2 23 370 392 369 392 0.96 12 18 0.45 35 5.5 4.4 2 22 399 419 399 419 0.93 13 18 0.022 1.7 9.6 0.7 2 23 426 447 425 447 0.97 14 18 6.8e-06 0.00053 20.6 1.0 2 23 454 476 453 476 0.95 15 18 0.26 20 6.2 0.9 3 23 494 513 493 513 0.95 16 18 1.3e-05 0.001 19.7 1.6 1 23 519 541 519 541 0.98 17 18 0.0016 0.12 13.2 0.0 2 23 546 568 545 568 0.94 18 18 0.0026 0.2 12.5 3.5 1 19 599 617 599 622 0.91
Sequence Information
- Coding Sequence
- CCCGATTCACTTGAAGTAATGGACACACATTTGGCCCTATTAGGCACTGCGAATGAACGGTTTAAGTGCTGCTGGTGTGACAAAGACTTCTCTCTAAAAGAATCATTGAGACAACATATGTTCAAACATATTGATGAAACTCAAGTGGAGTGTCCTCACTGTCATAAGATGTATGCGACCGAAAGGTATTTAAAGATACATGTTCGCTGTGTTCACAGCGAGGCTAAGAACAGAAAATGTGACTCATGCGGTATGAAATTCCGCTACTATCGCGATGTCAAACATCATACATGTACTGGTCCACCATACCTGAAACCATGTCATATTTGTGCTAAAATCCTAACGAGCAAAGTATCTTACGACTATCACATGAAGGTGCATAAGAATAAAGGAAAGATTATGTGTTCGACGTGTGGAAAATGTTTCGCGCATAAACCTGCCTTACAAAACCATGAAAAAACAATACATCAAGGAATAAAGAATCCTTACATTGGTAAGAAGAACCGCAAAAAGGTATTTTGCGAGTTGTGCGGCAAAGAGTATTACACTGATTACATGCCAACCCATATGAATCATCACAACAATATTCGTCCCCATCAATGCACGGTATGCAACAAGGGCTATTTCACTAATTGTGCCCTTGTCAAGCATATGCTTTCTCATCAAGGTGAGTTTTCTTGTGATGAGTGCGATAAGACTTTTGCGACTGCTTATGCTTTATCGAGACATGTTAAATCCGCACACAAAGTTATTGTTCCGAAGGACACCgagaagaaagaaagaaaagcaaaagcaaaaaaggcGAAGAAAGATAAGGAGGGGCAGAAAGAGGAGATACTACCACGTGCAAAACCTTATTCGTGTTATACTTGTGGCAAGCGTTTTAACAAGAATGCTTATTTGAAGAAACATTGCGAAACCAAGCATTCCTACTTGCCAGTTGATCTTTCGGCTGATGCGCCAGATTCACTTGAAGTAATGGACTCACATTTGGCACTCTTAGGCACTGCGAATGAACGGTTTAAGTGTTGCTGGTGTGACAAAGACTTCTCTCTAAAAGAGTCATTGAGACAACATATGTTCAAACATATTGATGAAACTCAAGTGGAGTGTCCTCACTGTCATAAGATGTATGCGACCGAAAGGTATTTAAAGATGCATTTTCGCTCTGTTCACAGCGAGGCTAAGAACAGAAAATGCGACTCTTGCGGTATGAaattccgatactaccgagaCGTGAAACATCATAAATGTACTGGTCCACCATACTTAAAAACCTGTCATATTTGTGCCAAAATACTAACGAGCAAAGTAGCCTATGACTATCACATGAACGTGCATAAAAATAAAGGGAAAATTATGTGTCCCACGTGTGGAAAGTGTTTTGCGCGTAAGGGGGCATTGGTGCACCATGAAAAAATCGTGCATCAAGGGATGAAGAATCCCTATATAGGAAAGAAAAACCGAAAGAAGGCAATTTGCGAGTTGTGTGGCAAACAATATTATGAAGATTACATGGAATCACATTTGAATCATCACAATAATATTCGACCTTTTCAATGCAACATATGCGAAAAGGGATTTTTCACTAAACAAGCACTGATGAAGCATAAGAAGGTGCATGAAGGTAAAGTTCCTTGCGATCAATGCGAAATGACTTTTACGAGTCCTCTTGCTTTGGCGAGGCATGTTAATTTGGCACACAAAGAAGCAAAGAGTGCAGAAAAGAAAGTAAGGAGAACGAAGAaagcaaagaaagaaaagaaaggaaaagtaCTGCGTGGTGAAAAACCTTATCCGTGTCACACGTGTGGTAAACCGTTTGCCAAGATTGCTTACTTGAAGAAACATTGTGAATCTAAGCATGACTTCGTGTTAGTTGATGTTGATGGTGTTGATCCCGTTGACCCTGGTAGAAATGGTAGTGTTACCTGTGTCGTATAA
- Protein Sequence
- PDSLEVMDTHLALLGTANERFKCCWCDKDFSLKESLRQHMFKHIDETQVECPHCHKMYATERYLKIHVRCVHSEAKNRKCDSCGMKFRYYRDVKHHTCTGPPYLKPCHICAKILTSKVSYDYHMKVHKNKGKIMCSTCGKCFAHKPALQNHEKTIHQGIKNPYIGKKNRKKVFCELCGKEYYTDYMPTHMNHHNNIRPHQCTVCNKGYFTNCALVKHMLSHQGEFSCDECDKTFATAYALSRHVKSAHKVIVPKDTEKKERKAKAKKAKKDKEGQKEEILPRAKPYSCYTCGKRFNKNAYLKKHCETKHSYLPVDLSADAPDSLEVMDSHLALLGTANERFKCCWCDKDFSLKESLRQHMFKHIDETQVECPHCHKMYATERYLKMHFRSVHSEAKNRKCDSCGMKFRYYRDVKHHKCTGPPYLKTCHICAKILTSKVAYDYHMNVHKNKGKIMCPTCGKCFARKGALVHHEKIVHQGMKNPYIGKKNRKKAICELCGKQYYEDYMESHLNHHNNIRPFQCNICEKGFFTKQALMKHKKVHEGKVPCDQCEMTFTSPLALARHVNLAHKEAKSAEKKVRRTKKAKKEKKGKVLRGEKPYPCHTCGKPFAKIAYLKKHCESKHDFVLVDVDGVDPVDPGRNGSVTCVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -