Lnew004021.1
Basic Information
- Insect
- Liometoxenus newtonarum
- Gene Symbol
- -
- Assembly
- GCA_030264535.1
- Location
- JARJEB010006479.1:11022-15603[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0011 0.086 13.7 0.2 1 23 21 44 21 44 0.94 2 24 0.87 67 4.6 0.6 3 23 52 72 50 72 0.84 3 24 0.00066 0.051 14.4 4.9 2 21 80 99 79 100 0.94 4 24 0.2 16 6.6 0.1 2 23 108 129 107 129 0.97 5 24 0.0033 0.26 12.2 1.1 3 23 138 159 136 159 0.94 6 24 6.9 5.4e+02 1.7 0.2 3 15 183 194 182 202 0.69 7 24 7.1e-05 0.0055 17.4 1.1 1 23 208 230 208 230 0.98 8 24 0.0086 0.67 10.9 0.1 6 23 233 250 232 250 0.99 9 24 0.0023 0.18 12.7 0.3 2 23 257 279 256 279 0.95 10 24 0.0073 0.57 11.1 2.8 3 20 288 305 287 307 0.93 11 24 0.0018 0.14 13.0 0.4 2 23 315 336 315 336 0.98 12 24 0.00049 0.038 14.8 0.1 3 23 345 366 344 366 0.94 13 24 0.88 68 4.6 0.3 3 23 383 402 382 402 0.93 14 24 0.67 52 4.9 0.1 2 23 423 444 422 444 0.94 15 24 7.1e-05 0.0056 17.4 0.0 1 23 463 485 463 485 0.98 16 24 3.3 2.6e+02 2.7 0.8 1 10 491 500 491 517 0.73 17 24 0.19 15 6.6 2.7 2 23 525 547 524 547 0.93 18 24 0.00011 0.0087 16.8 0.9 1 23 553 576 553 576 0.97 19 24 6.2 4.8e+02 1.9 0.8 1 10 584 593 584 596 0.90 20 24 0.0049 0.38 11.6 0.3 1 23 611 634 611 634 0.96 21 24 0.08 6.2 7.8 0.1 3 23 638 658 636 658 0.96 22 24 0.00035 0.027 15.2 0.1 1 23 681 703 681 703 0.98 23 24 4.7e-05 0.0037 18.0 0.6 1 23 709 731 709 731 0.98 24 24 0.018 1.4 9.8 6.9 1 23 737 759 737 760 0.93
Sequence Information
- Coding Sequence
- ATGGCAACCGAAGCAGATATCAAACAGTATCTGGCAACATTAAAACCAGATAGAAAATCATTTCCTTGTTTAGCTTGTGATAAGAGTTATGGTCGTAAAAAAGGTTTAAGGGTTCATTTGAAAGCGATTCACCTTAATGTTGCGAAAGTGCCATGTCCAGAATGTAAAAAGTACCAAAATCCACATCAATTATCGCAACACATTTATAGAGTGCATAAAGAAACAACCAAAACACAAGTTTGTCATCATTGTGGTGAGAAGTTTAAATACAGACGCGAACTGAATCAACATCAATGTTCAAATGGCTATAAATTCATGCAGAAGTGTGAATTTTGCGATATTGTATTACAATCAATGCCGGCACTTAAAGAACATACGAAAATTCATACTAAGGTCGAAAAGGAATGTCTTTGTGATATTTGTGGATTGTCGTTGACATCAAAGGGGAAGTTAACTGTTCATAGACAGGCCAAACATGCAGGGATAGTAAATAATTCTGAAAGAAAATCAATTCGGAAACCTCATGTAAGACCTGGACCACGATTTTGTGACTTGTGCGGGAAGCAAGTTAGCTATAATCAGTGGCAGCCCCATTTGAATATGCATAATAATGTGAAGCCACATGTATGCAGTTATTGTGGTAAAGGGTTTGCAAGCCCTGAACGGCGTAGGGAACATTTAAGGACTCATACAGCGTGTGAAAAGAGCTATCCGCGCAAACAAGGCCTGAGGGTCCATTTACTCACGCACCTTAACGCAACAAAACTCCAGTGTCCGGAATGTCGCAAACAATATGACAATCCGACACGATTATCGCAACACATTTATCGAGTTCATAAAGATTCAACGAAACATCAAGCATGTCATCATTGCGGTGCCAGGTTTAAATATCGACGTGAACTCAACGACCATGAATGTTGGAACGATTTCAAGTTCATGGAGAAATGTGAATTATGCGATGCGATTTTTTACTCACTGCAATCACTTAAACAACATACGCAAATTCATTGCTATACGGGAAACAATTGGCTTTGTGACATTTGCGGCGCGTCGTTGTCATCCAAAGGGAATTTGAAAGCACACCGATTGGCCAAGCATGAAGGTGTTAAGCTTCACATAAATAAGAAACGACCTGGACCAAAAATTTGTGATCTGTGCGGGAAGCAGATTAGTTACAATCAGTGGAAGGCGCATACGAATATGCataataatcataaaccaCATGAATACCTGACTGATATTTACGGAATGGAAGAGAAGTATATGGTTTGTGAATATTGTGGTTTACAAATTGAGGGTATTGCTAAATTTCGCTACCACATGAATATTCATAATGGAAGGAACTTAGAGAAAAAGTTGGCAAAACAATCTCAAGGCAAGAGTCGATATGTTTGCGATACTTGTGGTCAAGTATTGGCGACGAAGGCGGGCTTGAATGATCATATGAATAATCATAAAGGACTCAAACCATATTCGTGTAAAATTTGCAGGACTATGTTTTTGAAGAAgACCTATTGTAGTATTGAAGCCATGAAAATCCATTTAAGCAAACTAAAGGTGGCAGTTAGTAGTAAATGCCCGCTGTGTGAATTTTACTGTCCACATAAATTTGCCTTGGAGGAGCATATGTATTTAAAGCACATTCGTGAAACACCGTTCAACTGTCCAGTATGCGagaaaagttttcaaatgCAAAAGTTTCTTAACAGCCACTTAATGACTGACCATACAGCTCATGTCGTTAAGACATACAAGTGTACTTTTTGCCAAAAATTGTTTCTTCAGAGTGTGAGATATCATAAATGCATTGTTACTGAGGATGATTTTATGTTTCCATGTGATATTTGTGGTGATAAATATTATACCCAGAAAGGACTGAATGATCACAAAGAAACACTGCATAGCATAATTTGTGAATATTGTGGTGTGAAAATCGACAGCATCAGTAAGTTTCGTTATCATATTGATACTCATACCGGGAGAAACTTGGAAAAACGATTGGCAAAGAAGTTGGCAAGAAAAGCTCAATGCAACAATCCATTCGTTTGCGAAATTTGTGGTAAAACATTGCTGACGCCGAAGGGCTTACGAGAACATATGAATAATCATGAAGGCTTGAAACCATATATTTGTGGAATTTGTAAGACTTCGTTTGCGAAGAAGACTACTCTTGACATACACATGAGACAACATACAGGGGAAAAACCGTATTTATGTAATTACTGTCAAAAGACTTTTACGCAATACACGAATTGTAAAATGCATATTGCTAAGCATCATGGAGATCTGGTTAAAACCGTGATTAAGAACTAA
- Protein Sequence
- MATEADIKQYLATLKPDRKSFPCLACDKSYGRKKGLRVHLKAIHLNVAKVPCPECKKYQNPHQLSQHIYRVHKETTKTQVCHHCGEKFKYRRELNQHQCSNGYKFMQKCEFCDIVLQSMPALKEHTKIHTKVEKECLCDICGLSLTSKGKLTVHRQAKHAGIVNNSERKSIRKPHVRPGPRFCDLCGKQVSYNQWQPHLNMHNNVKPHVCSYCGKGFASPERRREHLRTHTACEKSYPRKQGLRVHLLTHLNATKLQCPECRKQYDNPTRLSQHIYRVHKDSTKHQACHHCGARFKYRRELNDHECWNDFKFMEKCELCDAIFYSLQSLKQHTQIHCYTGNNWLCDICGASLSSKGNLKAHRLAKHEGVKLHINKKRPGPKICDLCGKQISYNQWKAHTNMHNNHKPHEYLTDIYGMEEKYMVCEYCGLQIEGIAKFRYHMNIHNGRNLEKKLAKQSQGKSRYVCDTCGQVLATKAGLNDHMNNHKGLKPYSCKICRTMFLKKTYCSIEAMKIHLSKLKVAVSSKCPLCEFYCPHKFALEEHMYLKHIRETPFNCPVCEKSFQMQKFLNSHLMTDHTAHVVKTYKCTFCQKLFLQSVRYHKCIVTEDDFMFPCDICGDKYYTQKGLNDHKETLHSIICEYCGVKIDSISKFRYHIDTHTGRNLEKRLAKKLARKAQCNNPFVCEICGKTLLTPKGLREHMNNHEGLKPYICGICKTSFAKKTTLDIHMRQHTGEKPYLCNYCQKTFTQYTNCKMHIAKHHGDLVKTVIKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -