Lnew006886.1
Basic Information
- Insect
- Liometoxenus newtonarum
- Gene Symbol
- -
- Assembly
- GCA_030264535.1
- Location
- JARJEB010010979.1:19556-22783[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.014 1.1 10.2 2.0 2 21 175 194 174 195 0.93 2 14 0.011 0.84 10.6 3.2 1 23 205 230 205 230 0.97 3 14 1.9e-05 0.0015 19.2 3.2 1 23 236 258 236 258 0.97 4 14 0.00021 0.017 15.9 1.0 1 20 264 283 264 285 0.95 5 14 0.00021 0.016 15.9 0.1 3 23 294 314 292 314 0.96 6 14 2.8e-05 0.0022 18.7 0.4 1 23 471 493 471 494 0.95 7 14 0.00019 0.015 16.1 0.5 3 23 502 523 502 523 0.98 8 14 1.7e-05 0.0013 19.4 1.7 1 23 582 604 582 604 0.98 9 14 8.6e-05 0.0067 17.2 1.0 1 23 612 634 612 634 0.97 10 14 1.9e-06 0.00014 22.4 0.5 1 23 641 663 641 663 0.96 11 14 3e-06 0.00023 21.8 0.7 1 23 669 691 669 691 0.98 12 14 2.1e-06 0.00017 22.2 0.5 3 23 699 719 697 719 0.96 13 14 9.6e-05 0.0075 17.0 2.1 1 23 725 747 725 747 0.99 14 14 0.00078 0.061 14.1 0.4 1 23 752 775 752 775 0.98
Sequence Information
- Coding Sequence
- ATGAACGTTCACGAATCAAATTTAATCGAAATGTGCCGTTGCTGCAAGCAAAGGGGTACGGCCATGGCTTCAATCTACGATGAAAACTGCAATGACCCCGGCTATCCCCGCATTGACGAGATGCTAATGGCGTGTGCAACAATAAATGTGCAACATGGTGATGGACTTCCGTCGGTCATTTGCTTATCATGCTTGGGCCGTGTAAAAATAGCGTACGCCGTGAAACAGGAGCTTGAAAATACAGATTCTGAATTACGACTTTATCTAAAGAGCAAAAATACACCAAACGTACACAATCAGGATAAGGATGCGAATTCTGAGTTGATGAATAGCTTTCTAAATGATTTCTTTCAAAATACGAATACGTCTAATGAAAACCCCGAAATTCAGGTGCAGGTACAAGTCGGTAAACCTCTTGAAATTCCAAAACTTGatgtaaattatgaaaatgataataatataagTGATGAATTAGTTAAACTGCAAGGGAATTTGGATATTGATGAAggttatttgcaaataaaatgtcGACAATGCGTAAAAACCTTCACCACTTTGGAAAGCTACAAATCACATACACATACGCCCAAAAACgttaaagaaaaacatattttcactTGCAAACAATGTGATAATGATAAACAGTACAGAAATCTACGGTCCTTGCGTCGTCATGAAAGACGTTTTCACGAGAATTCCAAAATGTTTGCATGCACGATTTGCAGTAAACAATTCTCGCGCATCGAACATCTCAAGCGACATCTTTATACacatttgaaagaaaaacCGTTCCCTTGCGATAAATGTACGCGCCGATTTAACCGATTGGAACATTTAACCAATCATTACGCACTTTGTGACGGTTCCCGATTACTTGCGTGTGATATTTGCAACAAAGGCTTTGCTAGGGCAATCACTTTAGAACTGCATAAAAAGATGCATgagaattataattttgaaaagatGGCAGTGTTGGATTTAGCAGATTTGgaacattttgaaaagttttatacAATTGTTGATGCTGTTAACGAAAATGATGATAGTGATGAAgttaatgatgatgatgagggTCCGGAATTGggggaaaataatttattgcctGGTCGAAATCaagtaacaacaaaaacaaatgtaaatcAATTGAATAGTAGCATTAAAGTCGAACCATTAGAAGAAGAGTTTggtgttgatgttgaaatacATGATTCAGATAGTGCGCAGTCCGAGTATAAACCAGGTAGTAGGAAATCACCACGGGTGAAGAGGAAAAAGAGAAGGACTAGTAAAAGTAGTAAAAAACGTGGTAGACCGCCGAAAATTCAATCGGCTGATTCAGAAACGGTAGTAATGCAATCCGAAAATCAAGATAATGAACTAGAGCCTGGACAAGTACCCGAACAAGAAAACTTTGAATGTCCAATATGTAATGAAACATTTACCCGAATAACATTGTTAGAAGCACATGGAAAAGAACATCATGAAAATGAGAAGGTCTTAGGGTGTAAAATATGTGAGCAAACATTTTCGCGTGTTTACGCCCTAAATTCTCATGTACAAACCCAACATCAACAACATCCTACAATGAAGATGGAATCGGAAACTGCATCTGGTCTCAATTGCAATGCGTGTTGTAAAATGTTTCAAAGCGTGGCGCAATTGGAGGAACACAAATTGCAAGAAAATCATGATTATATCGATGATCGTGATATTAACAAGTCTGCAAAGAAAATGGATAAACGATTTCAATGTGAGAAATGTACGAAAGCTTTCACGACGGAAAAGTATTTGCTTGTGCACGTGAAAAAACATGATGAGGCAGAggagaataattttgtttgtccGAAATGTTTAAAGCCATTCTTGTCGAAGTCGAATTTGACTGAGCATATGAAATTTCACAATGATAAGTCCAAGAAGTTTTTGTGTTCCGAATGTGGGCAGAGGTTTATTAGGAATGACTATTTGGTTATACACATGCGAAGACATCGTGGCGAGAAGCcttttaaatgcaaattttgtgGAAAAGGTTTTCCAAGAGCTACTGATTTGACGGTTCACGAAAGATATCACACCGGGGAGAAGACGcatttgtgtgttgtttgtgGACGTGGATTTGGCAGAGCCTATAATTTGACAGTTCACATGCGTACACACACCGGTGAAAAACCATACAAATGTACATACTGTGAATCAGCATTCGCGCAATGCCAAGATCTCAAGGCTCATGTGCGACGACACACCGGAGAAAGATTCCAATGCGATCTCTGTTCggaaacatttataatgggtTATGCTTTAACGCAGCATAAACGAACCGCGCATGGCCTTAACATTGTGAGTAACATTCGTCGATTACAACTATCAGAAAAACAAGATCCGGATGCTCCAACGCCGACCACCGTTAAACTTCCACGACCTGTAGTACCTGCGGCAATGCTACCCGTGATTCCACATCAAGTGCCAGATTTCATTGATCCTCAGAAAATGGAACCCGAATATTCATAG
- Protein Sequence
- MNVHESNLIEMCRCCKQRGTAMASIYDENCNDPGYPRIDEMLMACATINVQHGDGLPSVICLSCLGRVKIAYAVKQELENTDSELRLYLKSKNTPNVHNQDKDANSELMNSFLNDFFQNTNTSNENPEIQVQVQVGKPLEIPKLDVNYENDNNISDELVKLQGNLDIDEGYLQIKCRQCVKTFTTLESYKSHTHTPKNVKEKHIFTCKQCDNDKQYRNLRSLRRHERRFHENSKMFACTICSKQFSRIEHLKRHLYTHLKEKPFPCDKCTRRFNRLEHLTNHYALCDGSRLLACDICNKGFARAITLELHKKMHENYNFEKMAVLDLADLEHFEKFYTIVDAVNENDDSDEVNDDDEGPELGENNLLPGRNQVTTKTNVNQLNSSIKVEPLEEEFGVDVEIHDSDSAQSEYKPGSRKSPRVKRKKRRTSKSSKKRGRPPKIQSADSETVVMQSENQDNELEPGQVPEQENFECPICNETFTRITLLEAHGKEHHENEKVLGCKICEQTFSRVYALNSHVQTQHQQHPTMKMESETASGLNCNACCKMFQSVAQLEEHKLQENHDYIDDRDINKSAKKMDKRFQCEKCTKAFTTEKYLLVHVKKHDEAEENNFVCPKCLKPFLSKSNLTEHMKFHNDKSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKFCGKGFPRATDLTVHERYHTGEKTHLCVVCGRGFGRAYNLTVHMRTHTGEKPYKCTYCESAFAQCQDLKAHVRRHTGERFQCDLCSETFIMGYALTQHKRTAHGLNIVSNIRRLQLSEKQDPDAPTPTTVKLPRPVVPAAMLPVIPHQVPDFIDPQKMEPEYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -