Basic Information

Insect: Liometoxenus newtonarum
Gene Symbol: -
Assembly: GCA_030264535.1
Location: JARJEB010006187.1:2-5189[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.0069 0.54 11.2 0.5 5 23 2 21 1 21 0.96

2 26 0.0055 0.43 11.5 0.9 2 23 26 47 25 47 0.96

3 26 0.00085 0.066 14.0 2.0 1 23 65 87 65 87 0.98

4 26 0.00083 0.065 14.1 1.1 1 23 93 115 93 115 0.98

5 26 4e-05 0.0031 18.2 4.2 1 23 121 144 121 144 0.97

6 26 0.0048 0.37 11.7 4.1 2 23 169 192 165 192 0.89

7 26 0.023 1.8 9.5 0.7 1 23 198 220 198 220 0.91

8 26 5.4 4.2e+02 2.1 1.1 1 10 230 239 230 251 0.74

9 26 3.8 2.9e+02 2.6 0.5 2 12 259 269 258 281 0.78

10 26 0.7 54 4.9 0.5 2 23 286 307 285 307 0.95

11 26 0.00032 0.025 15.4 0.2 1 23 326 348 326 348 0.96

12 26 9e-05 0.007 17.1 4.9 1 23 354 376 354 376 0.98

13 26 0.0001 0.0078 17.0 5.7 1 23 382 405 382 405 0.97

14 26 0.063 4.9 8.2 0.6 2 23 447 470 446 470 0.91

15 26 0.0054 0.42 11.5 0.6 1 23 476 499 476 499 0.97

16 26 0.00011 0.0086 16.8 1.0 2 19 509 526 508 526 0.97

17 26 0.00034 0.026 15.3 1.8 2 23 536 558 535 558 0.95

18 26 0.012 0.94 10.4 0.4 2 23 564 585 563 585 0.96

19 26 8.2e-06 0.00064 20.4 0.7 1 23 604 626 604 626 0.97

20 26 0.0049 0.38 11.6 1.9 1 23 682 705 682 705 0.96

21 26 0.0017 0.13 13.1 2.7 1 19 714 732 714 735 0.92

22 26 3.5e-06 0.00027 21.6 3.2 1 23 741 764 741 764 0.98

23 26 0.09 7 7.7 0.0 2 23 769 790 768 790 0.96

24 26 0.00047 0.036 14.8 2.2 1 20 809 828 809 831 0.95

25 26 4.8e-06 0.00038 21.1 0.5 1 23 837 859 837 859 0.98

26 26 0.00046 0.036 14.9 7.4 1 23 865 888 865 888 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.0069	0.54	11.2	0.5	5	23	2	21	1	21	0.96
2	26	0.0055	0.43	11.5	0.9	2	23	26	47	25	47	0.96
3	26	0.00085	0.066	14.0	2.0	1	23	65	87	65	87	0.98
4	26	0.00083	0.065	14.1	1.1	1	23	93	115	93	115	0.98
5	26	4e-05	0.0031	18.2	4.2	1	23	121	144	121	144	0.97
6	26	0.0048	0.37	11.7	4.1	2	23	169	192	165	192	0.89
7	26	0.023	1.8	9.5	0.7	1	23	198	220	198	220	0.91
8	26	5.4	4.2e+02	2.1	1.1	1	10	230	239	230	251	0.74
9	26	3.8	2.9e+02	2.6	0.5	2	12	259	269	258	281	0.78
10	26	0.7	54	4.9	0.5	2	23	286	307	285	307	0.95
11	26	0.00032	0.025	15.4	0.2	1	23	326	348	326	348	0.96
12	26	9e-05	0.007	17.1	4.9	1	23	354	376	354	376	0.98
13	26	0.0001	0.0078	17.0	5.7	1	23	382	405	382	405	0.97
14	26	0.063	4.9	8.2	0.6	2	23	447	470	446	470	0.91
15	26	0.0054	0.42	11.5	0.6	1	23	476	499	476	499	0.97
16	26	0.00011	0.0086	16.8	1.0	2	19	509	526	508	526	0.97
17	26	0.00034	0.026	15.3	1.8	2	23	536	558	535	558	0.95
18	26	0.012	0.94	10.4	0.4	2	23	564	585	563	585	0.96
19	26	8.2e-06	0.00064	20.4	0.7	1	23	604	626	604	626	0.97
20	26	0.0049	0.38	11.6	1.9	1	23	682	705	682	705	0.96
21	26	0.0017	0.13	13.1	2.7	1	19	714	732	714	735	0.92
22	26	3.5e-06	0.00027	21.6	3.2	1	23	741	764	741	764	0.98
23	26	0.09	7	7.7	0.0	2	23	769	790	768	790	0.96
24	26	0.00047	0.036	14.8	2.2	1	20	809	828	809	831	0.95
25	26	4.8e-06	0.00038	21.1	0.5	1	23	837	859	837	859	0.98
26	26	0.00046	0.036	14.9	7.4	1	23	865	888	865	888	0.95

Sequence Information

Coding Sequence: GAACATTGTAGCAGGGAATATTCGAGTAAGACACAGTTGGAACTTCATATCAAAATGGTGCACGGGGACATCATCGTTTGTGAAGTATGCGGCTTAGAATGTAAAGGTCAATACACCTACAAGTATCATATGAATAATCATACGGGAAAAAACGCTCAAATGAAAATGCagagaaaacaaattaagaaGAAATACGTGTGTCATGTCTGTAACAAAGTTTTGCAAACGAGTCAAGGTTTTCGATCACATATGGATAAACATAATGGGATCAAATCTTTCGTCTGTAAATTTTGCCCGAAAGCATTTACAGCAGATCACGCGTGGCGAATGCATTTGAGGACTCATACTGGGGAGAAACCACATACTTGCAACTTTTGCGGCAGATCTTTCCGACAAAACAATGTCCTCACGAATCATTTGCGAAGAAGACACAAGGAACTgATCATTAGCAGAGAGGAAGTGAGAAAATATATGCAATCAATTCCTAATGGATGCACTAAATGCAAATGTTTGATGTGCCCTGGGAAAGTATATTCAAGCAAAGTTTCATTGAGACGTCACATGCGTGAGCAGCATGTGATTAAAAAGCCGTACGAATGTATAAGCTGCAAAAAGACTTTCCCAGTGAAAGCATCTCTTAAAGTACATTTCACGAGTCATAAAGTTACAGTGGATGGGGTAGAGAAATACCGATGTGAAATATGTCAAAAGTTATATTTAAGTCGGTACATTTTAAGCAAACACACATGTGTTGTGGATACTGAGGAGAAGGTCCCATGCGAAATATGTGGCAAACAGTGTCACAATGTTATGGCAGTGGATTTGCACAAGGCTAATGTTCACTGTGACCCATTAATGTGCGTACTCTGCGGTGTAATATGTGAAAATTTACCGAAATATCGTTATCATATGGACAAGCATAATGGCAAAGCGGCGAAAAGAAAAGAACGAAAGCAAGCTCTTCCCAAGAAAGAATTTGTTTGCTCGGTTTGTGGCAAAACGATAACAACGAAGCAATCGTTTGATGCACACATGGATGGTCACAATGGAGTCAAACGACATGTATGCCCAGTTTGCTTCAGGGCGTTTACGAATAGACATACGCTTAGACTGCATAAAAGAACTCACACTGGGGAGAAACCTTACTCGTGTAATTTTTGTGATAAGGCATTTTCACAAAATCATTGTCTTAAATCGCATATTGCTAAGAAACATAGAGATATTGAAAACTTGATTTCAACGCAGTTTTTACATCTGTATTCAAATGGTTTCAGGATTATTACCCAAGATGAAGTGGCTGAATATATGCAAGCAATTCCTAAAGGAAGTACAGACTGCGTGTGTTTTATGTGTCCCGGCAAAGTATTCTCTGGCAAACCATCATTGAGAGCTCACCTTTATAGATTGCATGTTATTGAAAAGCCATTCGAGTGCACAGTGTGCGGAGAACGATTTCAATTGAAAGGCTTTCTTTCCGGTCACTTGAAAAAGAACCATACAGTTAAAATTCATGGTGTGAAAATCCAATGTGAAATATGCCACAAATCATATTCAAATacggaaaatttaaaaaaacaccCATGCATTGTTCCTTCGCAGATgattaaatgcaaaatttgtGGAAGATTTTCCAAGAATGCCAAATGCTTGACAGCACATATGTCAAACGTACACTCTGGTTCTGCAATTGTTTGCAATATCTGTGGCGTTACCTGTGAAAATCCGATTAGATATCGCTATCATATGGCTAAACATAATGGAAAAGAAGcggaaagaaaagaaagagaaaaagcTTTACCCAAGAAAGAGTATGATTGCTCCGTTTGTGGCAAGAAGGTGTCATCGAAAAAGTCTCTTCGTGATCACATGAATCTTCATGAAGGAGTGAAACAATCCAATGACCAAGAAGAAGTTGAAGACTATTTACGCACTATCAAATGGGGCGAGAAAACAATGCAATGTCTTAAATGCCCATTTATTTGCAAGTCGGATAAGTGTAAATTGAAAATCCATATGTATCGCTATCATGTATTTGAGAAACCATTCGAATGTACAAAGTGcgatcaaaaatttcaattgcaagaGCTTCTAAGAATACATAATAAAAGAAGACATTTTGTTGGTGGAACGCCAGACCGATATGAGTGTAAAATCTGTCATAAGGTCTTTAAGTATAAATCTGGTATAAGTAATCATAGTTGTATTGACTCCCTCAAGAGATTCCAATGTGAAGTCTGCGGGAAGAAATTTTGTGGAAGAAGTCAGTTAAAGTACCATATCAAGAAGGTGCACAGCGATCCAATGGTTTGCGAAATCTGTGGATTAGTTGctgataatttaaataaatatcgcTATCACATGGATGTGCATAATGGAAAAGCAGAAGAAAGGAAGGAAAAGAGATTGACATTACCTAAGCAAGTTTATATCTGCTCGATGTGTGGCAAGAAACTATCCACGAAGAATTCTCTTCGAGAGCACATGGATTGTCATAATGGAGTGAAACGCTACGCGTGCACTGTTTGCGATAAATCATTTACGGCAAGAACTTATATGATTGTACATATGAGGACCCACACTGGGGATAAACTACATTCGTGTAAATTTTGTAGCAAGGCTTTTTCTCGACGTCATTCACTTAAGAAACATTTACTTAACAAACATGGAGATATTCCGGAATCGGAATTCACTCAAGTtgattaa
Protein Sequence: EHCSREYSSKTQLELHIKMVHGDIIVCEVCGLECKGQYTYKYHMNNHTGKNAQMKMQRKQIKKKYVCHVCNKVLQTSQGFRSHMDKHNGIKSFVCKFCPKAFTADHAWRMHLRTHTGEKPHTCNFCGRSFRQNNVLTNHLRRRHKELIISREEVRKYMQSIPNGCTKCKCLMCPGKVYSSKVSLRRHMREQHVIKKPYECISCKKTFPVKASLKVHFTSHKVTVDGVEKYRCEICQKLYLSRYILSKHTCVVDTEEKVPCEICGKQCHNVMAVDLHKANVHCDPLMCVLCGVICENLPKYRYHMDKHNGKAAKRKERKQALPKKEFVCSVCGKTITTKQSFDAHMDGHNGVKRHVCPVCFRAFTNRHTLRLHKRTHTGEKPYSCNFCDKAFSQNHCLKSHIAKKHRDIENLISTQFLHLYSNGFRIITQDEVAEYMQAIPKGSTDCVCFMCPGKVFSGKPSLRAHLYRLHVIEKPFECTVCGERFQLKGFLSGHLKKNHTVKIHGVKIQCEICHKSYSNTENLKKHPCIVPSQMIKCKICGRFSKNAKCLTAHMSNVHSGSAIVCNICGVTCENPIRYRYHMAKHNGKEAERKEREKALPKKEYDCSVCGKKVSSKKSLRDHMNLHEGVKQSNDQEEVEDYLRTIKWGEKTMQCLKCPFICKSDKCKLKIHMYRYHVFEKPFECTKCDQKFQLQELLRIHNKRRHFVGGTPDRYECKICHKVFKYKSGISNHSCIDSLKRFQCEVCGKKFCGRSQLKYHIKKVHSDPMVCEICGLVADNLNKYRYHMDVHNGKAEERKEKRLTLPKQVYICSMCGKKLSTKNSLREHMDCHNGVKRYACTVCDKSFTARTYMIVHMRTHTGDKLHSCKFCSKAFSRRHSLKKHLLNKHGDIPESEFTQVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -