Lnew004019.1
Basic Information
- Insect
- Liometoxenus newtonarum
- Gene Symbol
- -
- Assembly
- GCA_030264535.1
- Location
- JARJEB010006479.1:1-5232[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.8 62 4.7 0.6 2 23 22 45 21 45 0.75 2 24 0.0014 0.11 13.4 1.9 1 23 51 73 51 73 0.98 3 24 0.69 53 4.9 6.0 1 17 82 98 82 103 0.90 4 24 2.4e-05 0.0018 18.9 0.7 1 21 109 129 109 130 0.96 5 24 0.0012 0.093 13.6 0.4 1 23 156 179 156 179 0.94 6 24 0.00025 0.02 15.7 1.1 1 23 185 207 185 207 0.98 7 24 0.053 4.1 8.4 3.0 1 21 217 237 217 238 0.94 8 24 0.00011 0.0086 16.8 0.8 1 23 245 268 245 268 0.95 9 24 0.0071 0.55 11.1 0.1 2 23 273 294 272 294 0.96 10 24 0.061 4.8 8.2 1.2 2 23 334 356 333 356 0.90 11 24 0.022 1.7 9.6 3.9 1 23 362 384 362 384 0.97 12 24 0.00034 0.026 15.3 0.5 1 20 393 412 393 414 0.94 13 24 0.00063 0.049 14.4 0.2 1 23 421 444 421 444 0.95 14 24 0.0023 0.18 12.7 2.0 1 23 448 470 448 470 0.98 15 24 5.1e-07 4e-05 24.2 0.7 1 23 489 511 489 511 0.97 16 24 0.0089 0.69 10.8 0.5 1 23 517 539 517 539 0.98 17 24 0.094 7.3 7.6 0.7 5 23 547 566 546 566 0.93 18 24 0.00041 0.032 15.0 1.6 1 23 572 594 572 594 0.97 19 24 0.0089 0.69 10.8 2.6 1 23 605 627 605 627 0.98 20 24 0.00038 0.03 15.1 0.1 2 23 633 655 632 655 0.95 21 24 0.0023 0.18 12.7 0.2 2 23 660 681 659 681 0.97 22 24 0.00088 0.069 14.0 0.5 1 23 700 722 700 722 0.95 23 24 3.7e-07 2.9e-05 24.6 0.7 2 23 729 750 728 750 0.96 24 24 0.0048 0.37 11.7 6.9 1 23 756 779 756 779 0.96
Sequence Information
- Coding Sequence
- aCCACTACTAAAGAAGGAGTCGACGAATATTTAAGCAATATCAAATGGGACCACAAAAAATTGGAATGTCCCATGTGTCCATTTGTTACCAAGTCCAGGAAGTATTCAATGAAACGCCATATGTACTGGTATCACGTATTTGAGAGACCATACGAATGTACCATGTGTGaccaaaaatttcaattggcAGAGTTTCTCAAAGTGCACATGAATCATCATAATGATGTAATATCGGGAAAACGATTCGAGTGTAAACGCTGCCACAAGGATTATAGATCTAAATCTGGTTTACGCTGTCATAGTTGCATTGACACCGTCAAGAAATTTCAATGCAATGTTTGTGAGAATACATTCTCTCGAACCAGTTCATTAAAACGACATCTCAATGAAAACATAATTTTTCGGTCCTCCAGCCTAGAAGAAGTGGAGAGGTACTTGCGCACAGTGCAATGGGGAGCGAAGAAATTTGTATGTTCCATATGCCCATATGTTGGTTTCACAAAGCCATCATTGAAACGACATATGTATCTACGTCATGTCTTTGAAAAACCGTACGAATGTGAGATTTGCAAAAAACGCTTACAATTGAAATCGCTGCTCAAAGAACACATGAAAAATCATCGAGATCCATCTAGTAAACAGCCAACATATCGATGTGAAATCTGTCAAAAAGTCTATTTGTACAAACATGGCTTGAGAAATCATAGATGCCTCACTGACGATGGGAAAAAGTTCGAATGTAAAATGTGTGGACAAaagttttctaaaatttatgGATTGACGTTACATATGACCAATTTGCATGGCGAATCAGTTGTTTGTGAGCTATGTGGTGTGACACTTGCAAATAGAAGCAAATACATATATCATATGGATATGCATAATGGCAAAAATGCGGAAAGGAAATTGAAGAAACAGGCAGAGCCTAAAAAACAggCCATTACACGAGAAGAAGTTGAAGAATATTTAAGCACGATTCATTGGGAAGTGCGTAATTGCAATTGTTCTGTTTGTCCTTACATTGCACCTTCCAAGCCAACATTAAAACGTCATATGTATTTCCGTCACGTTTTTGAAAAACCACATAAATGTCATTTATGCGGAGAACGGTACCAATTGAAAGTACTACTCAGAGAACATCTGTACAGACACAACATTAGGGAAACACAGAATGCTTACCCGTGTGAACTCTGCGAGAAAGTGTACAAATCAAACGCTAGTTTGAAGAGTCATGTATGCCTTGCTATtgatgaaagaaaatttgaatgccAGATTTGTGGacaaatgtttcaaaaattacgAGGACTCAAGGATCATATAGCGAACTTGCATGGAGACACATATGTTTGTGAGACTTGTGGCATGACACTTAACAGTCAAAGCAAGTATTATCATCATTTGGCAAAACATAATGGAAAGGACGAGGAAAGAAAGTTGATCAAACAAAGTAAACCTAAAAAGGAGTTTGTCTGTCCAGTTTGTAAGAAAGTGTTTTTTCGAAATTCGGATCTTCAACGACATACGAATGGTCACTATGGCGTCAAGCCGTATGAATGCAGTGTCTGCAAAAACTTATTTAGTTCTGCGAGTGTTCGCAAAGTTCACATGAGGTTACACACCGGGGAAAAGCCGTTTCCGTGGTGCTCATATTTTTGTGGCTCCAAAAGGTTACTGAAGCGCCATATGTACACCTATCATGTATTTGAAAAGCCGTATGAATGTCAAGTATGCAAAAAGCGCTTCTCTCTAAAAGAGATGTTAAGCAGTCACTACTCATTACATCGAAGAAAAGTGCAAGTAGCTGTATTGAAatacaaatgtgaaatttgcGAACGGTTTTACTCCTGTCAAGCCCGATTGAATAACCATATGGAATCACACTTGGGACCGAAATTAAAATGTGACATTTGTAACAAGCAGTTTGGTGCCAAGGCATATTTACAAAAGCATGTTATAATGGTACACAGTGAATCACTGGTTTGTGACATTTGTGGTGTGAAATTTGATGGACTCTATAAGTATAGGTACCACATGGACACTCATACTGGCAAGGCTGCCGaacgaaaagaaagaaaacaaacattacCGAAAAAGGAGTTTTTTTGTGATATTTGTGGCAAAGTATTGAAATCGAAACAAGGCTTCCAGGAGCACAAGGATATTCACCAGGGAATTAAGTCACTCATATGTGAAGTGTGCCAGAAGGCTTTTACTTCTAAGAATACTTTGAAAGTCCACATGAGGACACACACCGGGGAAAAACCGTACACTTGTAAATATTGTCTTCAAGCTTTCTCGCAAAAACATTGTCTTAAAAATCATGTTGATAAGAAACATGGAGATATTGAAGACTTGTTGGAAACATCTtctgaataa
- Protein Sequence
- TTTKEGVDEYLSNIKWDHKKLECPMCPFVTKSRKYSMKRHMYWYHVFERPYECTMCDQKFQLAEFLKVHMNHHNDVISGKRFECKRCHKDYRSKSGLRCHSCIDTVKKFQCNVCENTFSRTSSLKRHLNENIIFRSSSLEEVERYLRTVQWGAKKFVCSICPYVGFTKPSLKRHMYLRHVFEKPYECEICKKRLQLKSLLKEHMKNHRDPSSKQPTYRCEICQKVYLYKHGLRNHRCLTDDGKKFECKMCGQKFSKIYGLTLHMTNLHGESVVCELCGVTLANRSKYIYHMDMHNGKNAERKLKKQAEPKKQAITREEVEEYLSTIHWEVRNCNCSVCPYIAPSKPTLKRHMYFRHVFEKPHKCHLCGERYQLKVLLREHLYRHNIRETQNAYPCELCEKVYKSNASLKSHVCLAIDERKFECQICGQMFQKLRGLKDHIANLHGDTYVCETCGMTLNSQSKYYHHLAKHNGKDEERKLIKQSKPKKEFVCPVCKKVFFRNSDLQRHTNGHYGVKPYECSVCKNLFSSASVRKVHMRLHTGEKPFPWCSYFCGSKRLLKRHMYTYHVFEKPYECQVCKKRFSLKEMLSSHYSLHRRKVQVAVLKYKCEICERFYSCQARLNNHMESHLGPKLKCDICNKQFGAKAYLQKHVIMVHSESLVCDICGVKFDGLYKYRYHMDTHTGKAAERKERKQTLPKKEFFCDICGKVLKSKQGFQEHKDIHQGIKSLICEVCQKAFTSKNTLKVHMRTHTGEKPYTCKYCLQAFSQKHCLKNHVDKKHGDIEDLLETSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -