Lnew015740.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Liometoxenus newtonarum
Gene Symbol
-
Assembly
GCA_030264535.1
Location
JARJEB010025126.1:1172-4205[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00025 0.019 15.7 4.2 1 23 152 175 152 175 0.97
2 15 1.4e-05 0.0011 19.6 4.0 1 23 195 218 195 218 0.97
3 15 6.2e-05 0.0049 17.6 0.8 1 23 273 295 273 295 0.99
4 15 0.00014 0.011 16.5 8.3 1 23 301 324 301 324 0.98
5 15 0.0004 0.031 15.1 4.4 2 23 344 366 343 366 0.96
6 15 1.2e-05 0.00091 19.9 2.5 1 23 427 449 427 449 0.97
7 15 0.00011 0.0083 16.9 1.6 1 23 455 477 455 477 0.96
8 15 0.0015 0.12 13.2 4.8 1 23 482 504 482 504 0.97
9 15 0.0005 0.039 14.8 0.0 2 23 514 535 513 535 0.97
10 15 3.1e-07 2.5e-05 24.8 1.7 1 23 542 564 542 564 0.98
11 15 2.4e-05 0.0018 18.9 1.6 3 23 576 596 574 596 0.92
12 15 0.0002 0.016 16.0 5.7 1 23 602 624 602 624 0.99
13 15 9.8e-06 0.00076 20.1 1.8 1 23 630 652 630 652 0.96
14 15 8.9e-08 6.9e-06 26.6 0.2 1 23 658 680 658 680 0.99
15 15 9.1e-05 0.0071 17.1 0.1 1 23 686 710 686 710 0.92

Sequence Information

Coding Sequence
ATGAACGAAGAAGAAACATTGGTGGCAACATTGGAAGCTATCGAGACGGAGCCTGAAGGTGATACGTTAACCGAACCACCGCCAGAAGAAACAGTAACGCAAAAGATATGCCGATCATGCCTCAAAGTCGACAAGCAAATGAAGAATATCTTCGTCGAAGATAACGGACGACTGGTGTTAATGATCAAAGAATGCACTTCAATTAAGGTAACAGTTAGTGATGGCCTACCCGACTCCCTATGTGCGGAATGCGAAGAGAAGCTCCAATCAGCGTACGAATTTCGTGAGTTTTTCAAGAACAACGACCAAGCGCTGCGGGCACATCTAAACGTGAAGcaggatgatgatgatgacgacgaAGAAGGAGAAAACGATGGGTCGATTTGTTTCGATCAGGATCAAGGGCAGCCAGACACGGATGATTCCGATAACGAGGACGTCAAGCCGGCCAAGTATAAATGCAACAAATGTACGAAAACGTTTACGTCCCCTCGAGTGCTCCACGCGCACAAACAACGCTCACACGATCAAGACGTCGATCCCGATTACGATGTGAAACCATTGTTTCCGAAGAGCAAGACTTATAGTTGTTCGCATTGCGATATGAAGTTCGCGCGACAACATTTATTGATGAAGCATCAGCGTGAAGCGCATTTGGAAGTGTCGTTGCACGAGAATAGCGCACACATCAAGACGGAAATCCAAGATGGGGATTATGATGAAGAGGAGGACGATGATGCGGATGACGGAGGAGCGGAAGAGGAACGTGATGGTGAAGATGATATTGTGGAAACGAAGAGTGGTGGCGCGAAGAAGTACGAATGTGAGTTTTGCAGAAAGGTATTGAGTACGGAGAGCGGTTTGAAGATACATCGGCGACGGCATACGGGGAAGAACTTGTACAAGTGCAATTTGTGCGAGAAATCGTTTACGAAGTGTAGTCACATGAAGCGGCACAGGAAGGTGCAGCATGGCGTTGCGACGACGGTGTACGATTATGAAAGACCGAATTCTAGCAAACGCGAAATGCAATGCGAGTTCTGCGATCGGAAATTCAAGTATAAAAAGAGCTTCACCCAGCATATGCATATTGAACATGGAATCGATGTCGACGAGGATGAATTAGTCGTCGAACCTATTGTTAAACGAAGAAGGAAGGATGATGAAAGTCATCACAAAAAAGACGGGGACGACGATTCAgATCGAAACGTTTTGTTTGTCTCATTAGCAGGTGATAGCGACGATGAAGAAAATTCCGAAACGAAAGAAAAGCGTTCGTATCCGTGTCACGTTTGCAGCGCGGAATTCACGCGTTCCAACCACCTCACACGTCACATGATCCTGCATCGCAATCTAATGACGCATAAATGTGACAAATGCGACGAGGCGTTCACCTCCGACGACCTCCTGAAGAAGCACACCATTCAGCATGCCGATAAGCCGTATCATTGTTTCGCATGCAACAAGACGTTCGTGCGCGGCGAACACTACATCAGGCATATTAAGACGCACGAGAATGAGGAGAGCAGCAAACTACTGCAGTGCCCCATCTGTCCGGAGCAATTCGAAGGCACCGATGCATTGGCGGCGCATATAAAAGTGCACGTGGCGAACGATAAGCGACACGTGTGCAACAGTTGCGGCAAGGCGTTCAATCGCGCCGATAATCTGCGAACGCATTTGAAGACGCATACCGGCGAGAAGGAGACacccaaattgcatttgtgcATCTATTGCGGCAAGGAGTTTAACAATTCGAGTAATATGATTGTGCACATGCGAAGACACACCGGCGAACGCCCGTATAAATGTAAACAGTGCGGCAAGGGATTCCCGCGGTCGCATGACTTGAAGTGTCATGAACGAACTCATTCGGGCGAGAAACCGTATTTGTGCACGCTATGCGGGAAATCGTTCAATAAGAGCAACAAATTGcTACGGCATACAAGAGTACATACCGGCGAGCGTCCGTACGTGTGTTCGATTTGCGGTCGCGCGTTTACGCAATCCAACGATTTAGCTTTGCATATGCGTCGACACACTGGTGCTCGTCCGTACGCGTGCGGCGTGTGTCCGGCCCGTTTCATCCAGTCGGGACAACTGAAAGCCCATCAACGCTCAAAGGGTCATTGGGTCGAAATGGCACCGGATCTGAAGGGCAGCTATCGCGTCGAACCTGTAATCAGTACGGGCGAATCGAAACCGATTCGATTCCGTCGGACAGCTTCCGGACACAAATATCATCCGCCCGACTTCGAGGACAAATCTGAGGAGACAATGAACGTAAACAATACGAAGGATGGCATTGTGACGATAACAACGTCGCCGACAACGGCTGCAACCGCGAACAATATGCATTTAGAACAAAGTACGGTGGTGCATGTTGAGAATTACACTCATCCGCATGCACACGCACACTACGGCGAACAGAACTATGTTGCGacaggaggaggaggagggaAGGTTGTCACCAGTGAAACTATTCAAGTTGTGCCGGCGCACAGCCAGCCGGCTAGCACGACCACCACATTCCATGAAGACTCCACTGGTACTGAAAGTAATAATGCTTTTTCGCCTAACGATGGGACTTATGAGTGTAGGAGTTATAGTTAG
Protein Sequence
MNEEETLVATLEAIETEPEGDTLTEPPPEETVTQKICRSCLKVDKQMKNIFVEDNGRLVLMIKECTSIKVTVSDGLPDSLCAECEEKLQSAYEFREFFKNNDQALRAHLNVKQDDDDDDEEGENDGSICFDQDQGQPDTDDSDNEDVKPAKYKCNKCTKTFTSPRVLHAHKQRSHDQDVDPDYDVKPLFPKSKTYSCSHCDMKFARQHLLMKHQREAHLEVSLHENSAHIKTEIQDGDYDEEEDDDADDGGAEEERDGEDDIVETKSGGAKKYECEFCRKVLSTESGLKIHRRRHTGKNLYKCNLCEKSFTKCSHMKRHRKVQHGVATTVYDYERPNSSKREMQCEFCDRKFKYKKSFTQHMHIEHGIDVDEDELVVEPIVKRRRKDDESHHKKDGDDDSDRNVLFVSLAGDSDDEENSETKEKRSYPCHVCSAEFTRSNHLTRHMILHRNLMTHKCDKCDEAFTSDDLLKKHTIQHADKPYHCFACNKTFVRGEHYIRHIKTHENEESSKLLQCPICPEQFEGTDALAAHIKVHVANDKRHVCNSCGKAFNRADNLRTHLKTHTGEKETPKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCKQCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYVCSICGRAFTQSNDLALHMRRHTGARPYACGVCPARFIQSGQLKAHQRSKGHWVEMAPDLKGSYRVEPVISTGESKPIRFRRTASGHKYHPPDFEDKSEETMNVNNTKDGIVTITTSPTTAATANNMHLEQSTVVHVENYTHPHAHAHYGEQNYVATGGGGGKVVTSETIQVVPAHSQPASTTTTFHEDSTGTESNNAFSPNDGTYECRSYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-