Lnew011632.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Liometoxenus newtonarum
Gene Symbol
ZNF236
Assembly
GCA_030264535.1
Location
JARJEB010018525.1:5941-12855[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 5.5e-05 0.0043 17.8 1.2 2 23 37 58 36 58 0.97
2 25 0.056 4.4 8.3 0.6 1 23 64 86 64 86 0.91
3 25 7.6e-05 0.0059 17.3 0.9 3 23 93 113 92 113 0.97
4 25 0.00068 0.053 14.3 0.7 1 23 119 141 119 141 0.98
5 25 0.0012 0.096 13.5 0.6 2 23 156 177 155 177 0.97
6 25 0.00014 0.011 16.5 6.9 1 23 202 224 202 224 0.98
7 25 4.4e-06 0.00034 21.2 0.8 1 23 230 252 230 252 0.97
8 25 0.00055 0.043 14.6 1.9 1 23 258 281 258 281 0.96
9 25 0.013 1 10.3 4.6 1 23 291 314 291 314 0.96
10 25 1.5e-07 1.1e-05 25.9 1.1 1 23 400 422 400 422 0.96
11 25 5.2e-06 0.00041 21.0 0.1 1 23 428 450 428 450 0.98
12 25 0.00021 0.016 16.0 2.2 1 23 455 477 455 477 0.98
13 25 0.00093 0.072 13.9 0.2 1 23 489 511 489 511 0.97
14 25 0.0021 0.17 12.8 3.3 1 23 566 588 566 588 0.98
15 25 0.0015 0.12 13.2 1.2 1 23 594 616 594 616 0.97
16 25 0.01 0.79 10.6 7.7 1 20 622 641 622 644 0.94
17 25 0.018 1.4 9.9 6.1 1 23 650 672 650 672 0.98
18 25 2.6e-05 0.002 18.8 1.5 1 23 968 991 968 991 0.94
19 25 9e-06 0.0007 20.2 2.7 2 23 998 1019 998 1019 0.98
20 25 7.2e-05 0.0056 17.4 1.3 1 23 1025 1047 1025 1047 0.98
21 25 0.93 72 4.5 2.0 2 23 1056 1077 1055 1077 0.96
22 25 0.00018 0.014 16.2 7.5 1 23 1083 1105 1083 1105 0.98
23 25 0.0023 0.18 12.6 0.6 2 23 1221 1243 1220 1243 0.95
24 25 0.001 0.078 13.8 1.7 1 23 1246 1268 1246 1268 0.96
25 25 5.7e-05 0.0045 17.7 1.1 1 23 1274 1297 1274 1297 0.97

Sequence Information

Coding Sequence
ATGCCCACACTattatttCAAGATCCTTCGATTGATACAATAACTTGTGGCAAAAAGCAAGGCGATATACTTACAAAACCACAAATTAAACGGAAAAGTAATCCAATAAAATGTCCTCTATGCCAAAGAGTCTTTGGTAAACTATCTCAGTATCGTAGTCACATGAAGAAACATCAGAATCCTAAACGATTTCAATGTGGGCTATGCaaagaaagttataacaaagaagtgaattataaaattcacAGTGTACTGCATGACAAGGGAATTCCGATCTGTCCTATATGTAATAGAAAATTCCAAAGACACGCCAGTCTCAAAGCTCATTTAATTATGCATGAAGTTGAAGAGACATATACCTGCTTGCATTGTAAGGCTGAATTTGAAAAGGAAGATGAATTAAATCGTCATTTAGAAGTGCACGAAGGGgacgaaattgaaattctaCAGACTGATACACCAATGAGTTGtgaatattgtaattatttgtttaatgaTGCTGATAAGTTCAAGGAACATTTACGTTTGCACATTCAGgcaAAAAGATTTGTAAATACTGGAAGAAATcgaccaaaaacaaaattgaaaacacgCGAGTATCCTCATAAATGCAAAGATTGTAGTAAAAGTTTCCCAAAATCTTGTCTACTTGAGCGACACAGACGAAGTCACACCGGAGAACGACCtttcatttgcCCGATTTGTAAAAAAGGTTTTACTCAGAAAGGTGCGCTACAAATCCATCTCCATAGGCATGAGGGAAAGAAACCACATAAATGCATGTTCTGCCAGGCTAGTTTCGTCCAAAAAGGGAATCTACGAGTACATTTGGAGAAAACACACACAGTGGTTGAACCTGGAGAAAAGCTTTACAAATGTTCACATTGTACATGCGTCTTTAAAAAGATATCATCGTTGAACGGACATGTTACGAGAGTCCATTCAAATTGTTTAACAGAGAGCGAACAACcggatattataaatattatttcgcAACTCAAAGAGTTAGATAGACAAACGTCAACTCCTCAAAAgcaaaacttacaaattccaAGTACAAATGATAATTATCAAAGTACACAGTCCCAAAATCACGAAGTGCCGAATGTTTCGTACGTTAAAATCGCTGATAGCAGTATTAACGGTGACATTAGGaatcatttaattaaacagAGCATTATTGGCGAACATAGATTGTATTTGTGTTCATATTGCAATAAAGAGTTCAAAAAGCCTTCGGATTTGATAAGACATATTCGTACGCATACAAGAGAAAAGCCTTatgaaTGTCCTGAATGTGGATTAATGTTTGCACAAAAATCAACAGTTACAAATCACTTGGCTACCCACctcaaaaatgaatttgaatgcAACGTGTGCAAGAAAAAATTTGGTTCAACTAGATCTCTTAATCTTCACTTGAAAAAACATGAGCAACTAACTGCAGCGCGCAAAACTCCGTGTtataaatgtacaatttgtGATCAAACTTTTGATTCATTGGAAAGTGCGAGTGTGCATTTGCAGTTGCATGAAGTGCAAGTTAGCGATGAAAATTTTGTGGCAATGGAGAAACGAATATCTAAACAAGAAATGTTGCAACCATTGATTGCAACCGATCAAGGattatttgaaataccacCACCTAAGCCTAAAACGCCTCTCGCTTCTTGCGAAGAATATAAAGAAAGGCCTTTCAGGTGTCAGCTTTGCAATGCTGCTTTTTTACGAAGCATGCATTTAAAGCGACATATGTATACCCACAGCGACAAGAAAGAGTTTACTTGTTCGATATGTGCCAAaCAATTTTATTCTCATGCTGCTTTGAAAGAGCACTTGATCTatcatacaaaaacaaaatcgcATTCTTGTCCGCATTGTAACAAATGTTTTCTAAATTCGAGCATGCTGCAGAGGCACATCATCTGTCATAAATCAGCAATGCCATACATTTGTCCGTATTGTAGAAAGCGGTTTAAAGCCAAGGAGCATTGTCGTAAACACATCGAAAGGCATAAAATGAACGATTCAAGTGTGATTGCCGAAGGGAATAACGATCAATTGCCACAAATTGATGCGAACTATTTTAGTACTTTGAACACCGATGGATTGATTtctgttaataatttattaacaaataatgtaATTAGTTTTCAACATAAGAATTCGAATGTCCAGGAAGACGTACAAATAATGCCATTGGTCGAAAATcCCAAAGAAATGACTGTTCctcaaattcaaatacaagAAGGCGAAACAACTCAATGGTTTCAGTTATTAGGAAGTACAAATGACAACGGATTGttacaacaattaaaatttcaaAATTCGGAAGAGGTGCTTCTCAATCAAATGCCTGAGCTTGAAGCCGCAGCCGATCAATTGAACTTTCCAATAGAAAATGCTCCTAATCTCATAACTGAATCTGCCAATTCTATAAATAACGAAACTTTTAATCCGGACAACGTTTTTAATCCAACTTTTAATGATCTCAGCATTACGCCCATAATTGCGCATCCGAAAGAAGTTTCGATGAATATTGCGAAAGAAATAGCTCAAAAATCCAATAATATCGCACCTCaagacaatttaattttggaaaatgtacaaatatcGAATGGTATCTCATCGAAGAAcgacattaattattttaatgtgaATTTTCGGGACTATTTAGATGTACCACAACTTCATTTGCCACAAGATGATCAAGAAAActcgaaatttgaaaatttatttgtgtgtATCAAATGCAAcggaaatatttcaaatttcgacCTTGACAATCACATATGTTCTGTTGAACAAAATATGCATGAAATTGCAACAGttgaagaaatattaaatacaaacTCAAAAATTCAAGGAGGAGAAAACACACCAGACTCACCAGAAGATAGTTTCACTTGCActaaatgtaataaaagttTCATTGACAAGGTCCGACTTAATAGGCATATATCAGCGAAACATAAAGTTATTAATGATAATACTTGTCAATTTTGCCAAaagatttttaagaaaaagtCAGATTTAgAAAGGCACGTTAGGACACACACCGGCGAAAAACCATTTTCATGCTTGAAATGTGATcggaaatttgcaataaaatcaaCTCTTGTGTCACATCTTCGTACACACAATCCCACTGAGATCAAAGATGTTCAATGTAAAGTGTGCAATGCCTACCTGAGCTGTAAATCAAGCCTGAAAACTCATACACTCATCCATAATGACAAACAACCATTCGTGTGTGAAATTTGCAATAAGACCTTCCGGCACAATCATCATAAAACAGCGCATATGTTGCGTCATAGACATACTGATTCAAAGAAAACTCAAAAAGTTAATGCTGTTAATATCCTACAATCGCTTATACTTGATACCAATAAGAAGATAATTGATGACAATCAACAACAAATCACAATGGAATCAGCACCTGAAGGGATGATTGCATCTGGAAATCTGTTTGCACAGGAACTTCCTGGCATTTTGGTGGATAATATGGATCCAGTTACAATCACGTTTACGTATCCTTcaatacaatttaaaatcgACGAAAATCATTCATCAGCACCTGtatcaaatgaaaaactagATTTTTCAGAACATGAAGTTGAAGAGCTTCCTGGGCACATgccaacaaaagaaaaaaaaatccagtGTGATGCCTGTAAAAAGTACTACGTAAGCAAATCGGTGTTGAAGAAACATCAAAGAGCATTACATGGCGACCACAAATGTGACAAGTGCAGCAAGGCATTCAATTCGATAGAGCTTCTGGAAAATCATTACAGTTTGCATTATGGACATAGGCCTTTCAGTTGCACTTTGTGCACGAACAGTTTTAGTACAGAAGCCAGTCTCAAGGTGCATATGAAAAGGATGCACCCATCATTAGGAtatgaataa
Protein Sequence
MPTLLFQDPSIDTITCGKKQGDILTKPQIKRKSNPIKCPLCQRVFGKLSQYRSHMKKHQNPKRFQCGLCKESYNKEVNYKIHSVLHDKGIPICPICNRKFQRHASLKAHLIMHEVEETYTCLHCKAEFEKEDELNRHLEVHEGDEIEILQTDTPMSCEYCNYLFNDADKFKEHLRLHIQAKRFVNTGRNRPKTKLKTREYPHKCKDCSKSFPKSCLLERHRRSHTGERPFICPICKKGFTQKGALQIHLHRHEGKKPHKCMFCQASFVQKGNLRVHLEKTHTVVEPGEKLYKCSHCTCVFKKISSLNGHVTRVHSNCLTESEQPDIINIISQLKELDRQTSTPQKQNLQIPSTNDNYQSTQSQNHEVPNVSYVKIADSSINGDIRNHLIKQSIIGEHRLYLCSYCNKEFKKPSDLIRHIRTHTREKPYECPECGLMFAQKSTVTNHLATHLKNEFECNVCKKKFGSTRSLNLHLKKHEQLTAARKTPCYKCTICDQTFDSLESASVHLQLHEVQVSDENFVAMEKRISKQEMLQPLIATDQGLFEIPPPKPKTPLASCEEYKERPFRCQLCNAAFLRSMHLKRHMYTHSDKKEFTCSICAKQFYSHAALKEHLIYHTKTKSHSCPHCNKCFLNSSMLQRHIICHKSAMPYICPYCRKRFKAKEHCRKHIERHKMNDSSVIAEGNNDQLPQIDANYFSTLNTDGLISVNNLLTNNVISFQHKNSNVQEDVQIMPLVENPKEMTVPQIQIQEGETTQWFQLLGSTNDNGLLQQLKFQNSEEVLLNQMPELEAAADQLNFPIENAPNLITESANSINNETFNPDNVFNPTFNDLSITPIIAHPKEVSMNIAKEIAQKSNNIAPQDNLILENVQISNGISSKNDINYFNVNFRDYLDVPQLHLPQDDQENSKFENLFVCIKCNGNISNFDLDNHICSVEQNMHEIATVEEILNTNSKIQGGENTPDSPEDSFTCTKCNKSFIDKVRLNRHISAKHKVINDNTCQFCQKIFKKKSDLERHVRTHTGEKPFSCLKCDRKFAIKSTLVSHLRTHNPTEIKDVQCKVCNAYLSCKSSLKTHTLIHNDKQPFVCEICNKTFRHNHHKTAHMLRHRHTDSKKTQKVNAVNILQSLILDTNKKIIDDNQQQITMESAPEGMIASGNLFAQELPGILVDNMDPVTITFTYPSIQFKIDENHSSAPVSNEKLDFSEHEVEELPGHMPTKEKKIQCDACKKYYVSKSVLKKHQRALHGDHKCDKCSKAFNSIELLENHYSLHYGHRPFSCTLCTNSFSTEASLKVHMKRMHPSLGYE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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