Lnew016672.1
Basic Information
- Insect
- Liometoxenus newtonarum
- Gene Symbol
- -
- Assembly
- GCA_030264535.1
- Location
- JARJEB010026560.1:23757-27611[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.6e-05 0.002 18.8 2.1 1 23 378 400 378 400 0.97 2 18 8.8e-05 0.0069 17.1 0.8 1 20 406 425 406 428 0.94 3 18 7.5e-06 0.00058 20.5 1.3 1 23 434 456 434 456 0.98 4 18 1.5e-05 0.0012 19.5 4.4 1 21 462 482 462 484 0.95 5 18 2.8e-05 0.0021 18.7 4.6 1 23 490 512 490 512 0.99 6 18 2.8e-05 0.0021 18.7 5.3 1 23 518 540 518 540 0.97 7 18 2.8e-07 2.2e-05 25.0 5.0 1 23 546 568 546 568 0.98 8 18 1e-07 8e-06 26.4 2.7 1 23 574 596 574 596 0.98 9 18 7.6e-05 0.0059 17.3 6.7 1 23 602 624 602 624 0.97 10 18 8.6e-06 0.00067 20.3 5.6 1 23 630 652 630 652 0.97 11 18 4.9e-07 3.8e-05 24.2 2.8 1 23 658 680 658 680 0.98 12 18 6.8e-06 0.00053 20.6 7.9 1 23 686 708 686 708 0.98 13 18 2.9e-05 0.0023 18.6 9.1 1 23 714 736 714 736 0.98 14 18 1.8e-05 0.0014 19.3 7.7 1 23 742 764 742 764 0.98 15 18 1.1e-05 0.00089 19.9 7.1 1 23 770 792 770 792 0.97 16 18 4.1e-05 0.0032 18.2 0.8 1 23 798 820 798 820 0.98 17 18 0.092 7.2 7.6 5.0 1 23 830 852 830 852 0.98 18 18 1.7e-06 0.00013 22.5 0.8 1 23 858 880 858 880 0.96
Sequence Information
- Coding Sequence
- ATGAACTCGGAGGGATCGCAGGCCCTTCCTGCACATGCAAACAATGGGAACAATGAAGGATCAACTAGATCACAAACAAGTACAACGACAGCCGTTACGGATTTACGAGTCAATACAACGGCGTTAAATGCTGTTGCACTTAGTTCTGTAGCTAAATATTGGGTGTTGACGAATTTACTACCAGGACCAATACCACAAGTGTCTGTTTATGGTTTACCTGGATCAACATCACGAAACGACAACCAAAAACTATCACAAGATTCAACTGTAACACAACATTCTAGCGTTGGAAGTTTAATTCAACCAGACAACATATTACTCTCACACAATGCAAATCTGACAGTGCCTACAAGTTCAATGCACCTAGATACACCAAATAGTCAACTAAACAATCATCAATCGAATTCATTAGTCTCgaatcaacaacaacagcaacaacaacacaacCAACTGCAGTCTCAAGGAAACATGGTGCAAGTTCAAGTCCAAGATAATATGGTATCAGTAATCGATGACAATAAGGATCACAAAGAGTTAGCCACGCATTTGGCTCAAGCACAATTACACATCGCTGAGAACAACCAATTGACTTCACAAGCAATGTCCGTACAGCATTTACAGCAATTACAAGTCCAACAAGTTTTGGACAATGTTGTCCGGATGGAGTCAGGATCGGATAATCAAAATAACGATGATCCAATGAACGATATAAAGGACGAGAAGGCATTACAGAATGCTACCAAGTTTCTTTCGGCGCAATTTGGTTTACAGGATATTAAACCGAATCTCATGGATGTGCGAACGGCTGATGGTAGTATTGTTAAGATATCGACAGGTTTGCCTGATCAGGATCTGGCGAAGACGATTGGCGTTGAAATGGTGCAGAACATGTTTAAGGTCAATGTTGATGATTTTAATCAATTGCTCGCATATCATGAAGTTTTCGGAAAGATACAAACTGAACCAACCGGGACGCTTGTTCAAACCGGACAGAACCAACAGGGTGGTGTTAATTTGCAAGGGAATGTTGTTAATAACATTTCAGCGGTGCCCAAAGTATTGGAGAATGATCAAGAGGCCTCTACCAGTGGAATTAATGCGGAAAACTCACCGACTATCATTGCAGGTACACATGTTTGTGATATCTGTGGAAAAATGTTCCAATTTCGTTATCAACTCATAGTCCATCGTCGTTACCACACCGAACGTAAACCATTTACATGCCAAGTATGCGGAAAAGCTTTCCCCAACGCGGCTGAACTGAGTCGCCACGGGAAATGCCATTTAGGAGGTAGTATGTTCACCTGTAGCGTCTGCTTCCACGTGTTTGCAAACGCAGCGTCATTGGAACGCCACATGAAGCGGCATTCGACTGACAAGCCATACAATTGCACTGTGTGCGGGAAGTCTTTCGCCCGCAAAGAACATTTAGAGAATCATACTCGTTGCCACACCGGTGAAACACCATATCGTTGTCAATACTGCGCAAAGACATTTACAAGGAAGGAGCATATGGTGAATCATGTCCGGAAACATACCGGTGAAACCCCACATCGTTGCGACATTTGCAAGAAAAGCTTCACGCGTAAAGAACATTTCATGAATCACGTCATGTGGCACACAGGTGAGACACCGCATCAATGTACAATTTGCGGTAAGAAATACACGCGCAAAGAACATTTAGCGAATCACATGCGTTCCCATACCAATGATACACCTTTTAGGTGCGAAATTTGCGGTAAGAGTTTCACCCGTAAGGAGCATTTTACGAATCACATTATGTGGCATACTGGCGAGACGCCGCATCGTTGCGATTTCTGTTCGAAAACATTTACGCGCAAAGAACATTTGTTGAATCATGTGCGACAACATACTGGCGAGTCGCCACATCGTTGTGGTTACTGCTCGAAGTCGTTCACACGTAAAGAGCACTTAATTAATCATGTGAGACAACACACTGGAGAGACACCGTTTAGATGTAGTTATTGTCCGAAAGCGTTTACACGAAAAGATCATTTGGTCAATCACGTTCGGCAACACACTGGTGAATCGCCGCATAAGTGCACGTATTGCACGAAGAGTTTTACCAGAAAGGAACATCTCACGAATCATGTGCGGCAGCATACTGGAGAGTCACCACATCGATGTCATTTTTGCTCTAAGAGTTTTACAAGAAAGGAGCATTTAACGAATCATGTGCGAATACATACTGGCGAATCGCCGCATCGATGCGAATTCTGTCAGAAAACTTTCACCCGAAAGGAACATCTTACTAATCATTTAAGGCAACATACTGGAGAAACACCGCATTGTTGCAATGTGTGCAGTAAACCGTTTACTAGAAAGGAACATCTTATCAATCATATGAGGTCGCATACAGGTGAAAGACCATTTAGTTGTAACGAATGTGGTAAATCATTCCCATTGAAAGGCAACTTATTGTTCCATCAACGTTCGCACAATAAAGGTGCACAAGCCGAACGTCCATTTCGTTGCGACTTGTGCGAGAAGGACTTCATGTGCAAAGGTCACTTAGTGTCCCATCGGCGTTCCCACAGTGGTGAACGACCCCATGCATGTCCTGATTGTGGAAGGACTTTTGTTGAAAAGGGCAACATGTTAAGACATCTACGTAAACATCAACAAGAACTAGCAGCAAGTCTACCACCACCCATCGTCGAAATGCAAATTCCACCACCAATAACGGTATCAACAAGTGCTGCCAGTTTACAACCGCAAGCTACACAAGCAACATCATTATCTAGTACAGTGTCGAGCGGTTCGATATTGCAACAAACATTAATGCATCCACCAAATACACATTCAGTACCTAGTGTACCAACGGCAAATGGTAACGTACTTGCTACGTATTGA
- Protein Sequence
- MNSEGSQALPAHANNGNNEGSTRSQTSTTTAVTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGSTSRNDNQKLSQDSTVTQHSSVGSLIQPDNILLSHNANLTVPTSSMHLDTPNSQLNNHQSNSLVSNQQQQQQQHNQLQSQGNMVQVQVQDNMVSVIDDNKDHKELATHLAQAQLHIAENNQLTSQAMSVQHLQQLQVQQVLDNVVRMESGSDNQNNDDPMNDIKDEKALQNATKFLSAQFGLQDIKPNLMDVRTADGSIVKISTGLPDQDLAKTIGVEMVQNMFKVNVDDFNQLLAYHEVFGKIQTEPTGTLVQTGQNQQGGVNLQGNVVNNISAVPKVLENDQEASTSGINAENSPTIIAGTHVCDICGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFPNAAELSRHGKCHLGGSMFTCSVCFHVFANAASLERHMKRHSTDKPYNCTVCGKSFARKEHLENHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGYCSKSFTRKEHLINHVRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRSHTGERPFSCNECGKSFPLKGNLLFHQRSHNKGAQAERPFRCDLCEKDFMCKGHLVSHRRSHSGERPHACPDCGRTFVEKGNMLRHLRKHQQELAASLPPPIVEMQIPPPITVSTSAASLQPQATQATSLSSTVSSGSILQQTLMHPPNTHSVPSVPTANGNVLATY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00904250;
- 90% Identity
- iTF_00048769; iTF_00904250; iTF_00049406; iTF_00084037;
- 80% Identity
- -