Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.33 7.6e+02 0.6 0.1 16 28 18 30 13 36 0.82

2 9 0.82 1.9e+03 -0.7 0.9 18 43 109 131 100 132 0.65

3 9 0.32 7.4e+02 0.6 2.4 8 26 128 146 121 159 0.75

4 9 0.0023 5.2 7.5 0.7 19 38 167 183 151 188 0.91

5 9 1.5 3.3e+03 -1.5 0.0 22 38 200 218 199 222 0.77

6 9 0.16 3.6e+02 1.6 3.2 16 27 225 236 208 250 0.74

7 9 0.63 1.4e+03 -0.3 2.7 13 43 250 282 241 283 0.65

8 9 0.038 86 3.6 1.9 17 43 282 305 271 306 0.73

9 9 6.6e-09 1.5e-05 25.2 0.5 10 43 317 347 314 348 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.33	7.6e+02	0.6	0.1	16	28	18	30	13	36	0.82
2	9	0.82	1.9e+03	-0.7	0.9	18	43	109	131	100	132	0.65
3	9	0.32	7.4e+02	0.6	2.4	8	26	128	146	121	159	0.75
4	9	0.0023	5.2	7.5	0.7	19	38	167	183	151	188	0.91
5	9	1.5	3.3e+03	-1.5	0.0	22	38	200	218	199	222	0.77
6	9	0.16	3.6e+02	1.6	3.2	16	27	225	236	208	250	0.74
7	9	0.63	1.4e+03	-0.3	2.7	13	43	250	282	241	283	0.65
8	9	0.038	86	3.6	1.9	17	43	282	305	271	306	0.73
9	9	6.6e-09	1.5e-05	25.2	0.5	10	43	317	347	314	348	0.90

Coding Sequence: ATGATCTTCTGCATTCCAGAAATAAGCGAGATCGTGTATAATGAAGTTTCCTTCGTTTTCTGTCTAAATTGTCACCAAGTATTAAAAGGTTACGCAAATTTACGAAGAAAGTATTTCCAGTGGCAGGAGGCCCTTCAGAAAGCCGAACTTTTCTGCGAAGTTAACgtgaaagaagaagaaacgaaTACAGAAATTGAAGAACAACAAACCGAAACAGGAACAGAGAATGTAGTCCAAACGGAAATCATAGAAGAAGATGAGGAAGATATGTCCGAAGAAAAAGAACGAAAACATGAGACTGTAGAAATAAAAGTCTCAACAAATTCGTGCCCTGTTTGCAAAATAACGCTCAAAAACAAATACTTGGTGAACCGGCACATAAAAACGGTGCACACCTCGGGGAAGCAGTTTGAATGCCAAATATGCAATCAAAAATTCGGAGCGAAAGTCTATTTAAGAGCACATGAAAAAACCCACGACGAATTGCGCCCGTATATGTGCCAGTTTTGCGGTAAAAGCTACAAATCCACATCGGATTTGTCCCATCACGAGCTCATACATGCCAATCGTCGCGCGTACAAGTGTCCCGAAGGTGAATGCAACAAAGCGTTTAACACATCTAGCGAATTGAATAAGCACAAGTTGATTGCGCATACTGCGCGGACGGCATGGAAGTACCAGTGTGATTATTGTGGCAGGAAGTTCCCCATGAAATGTACTCTCGATCGTCATGTCAAGTCGCACACGAATGACCGATCGTTTCAGTGTCACTTTTGCGTATATAAAGGTTTCACCAATACGGAACTGCGGAAACACTTGGCGAAACACGATGATATTCGCGCGCATAAATGTTTTATGTGTTCGGCGGAATACAAACGCAAAGCAACGTTGGAGGTGCATTTGCTGCAGAAGCATCAAATTGGTGATGGGGACGATGCTGATTTGCCGATTAAATTAACGGAAAAGAATTTTGTTTGTCAGTTTTGTGGGAAAAGATATACTAACAGCACTAGGCTGCGAACACATATTAGAAGTAATCATGCTGATGTCGAGATTGATGTCAATGTGTAA
Protein Sequence: MIFCIPEISEIVYNEVSFVFCLNCHQVLKGYANLRRKYFQWQEALQKAELFCEVNVKEEETNTEIEEQQTETGTENVVQTEIIEEDEEDMSEEKERKHETVEIKVSTNSCPVCKITLKNKYLVNRHIKTVHTSGKQFECQICNQKFGAKVYLRAHEKTHDELRPYMCQFCGKSYKSTSDLSHHELIHANRRAYKCPEGECNKAFNTSSELNKHKLIAHTARTAWKYQCDYCGRKFPMKCTLDRHVKSHTNDRSFQCHFCVYKGFTNTELRKHLAKHDDIRAHKCFMCSAEYKRKATLEVHLLQKHQIGDGDDADLPIKLTEKNFVCQFCGKRYTNSTRLRTHIRSNHADVEIDVNV

Sequence clustering based on sequence similarity using MMseqs2