Lnew012704.1
Basic Information
- Insect
- Liometoxenus newtonarum
- Gene Symbol
- -
- Assembly
- GCA_030264535.1
- Location
- JARJEB010020245.1:1-1146[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-07 0.00022 21.2 0.0 4 45 14 55 12 55 0.92 2 2 2.6 3.5e+03 -1.9 0.0 23 31 101 109 101 109 0.85
Sequence Information
- Coding Sequence
- ATGTCAAAAAGAGGACGCTATGGACTATGCtttgaaaatgatttattgGTAGCTATCGCTGCATACAAAAATGGTGATTACGGTTTGAATGAATGCAGTCGTATGTATGGAGTTCCTAAGGCAACTATCAAGAGACATGCTGATGAAAAGAACGCCGTTAGCAATCAAGTTAAATCATTGGGTAGACCGCCGATATTTTCTACGGATATGGAACGAATTCTTTCTGAGCACATCCTTCACCTTGAAGAATGCTTTTTTGGTTTAACAATTAAGGAAATTAGAAAACTGGCTTTTGATGTTGCTGAAAATTATGACTTACCACATAGTTTCAATAGAGATAAGAAAATTTCTGAGCGGCCACTGTGGGAATTGCAGAGAGTGCCCATCGGTGCTTCCGGAATTTGGCCGGTGAACAGACATGTATTTACAGATGACCAATTTGCACCAGCTGATGTTTTGCAACCTTCTGGAACCCCTGTTACATCTTCTAGcagtgatgatgatgaatttAGTAGTGATAACGCAACGCAGAACGAGAACGAACGATTTAAGAGATTGCTTGAAGAACTATCACCGCGAGCAAAGAAAAGTCCAAA
- Protein Sequence
- MSKRGRYGLCFENDLLVAIAAYKNGDYGLNECSRMYGVPKATIKRHADEKNAVSNQVKSLGRPPIFSTDMERILSEHILHLEECFFGLTIKEIRKLAFDVAENYDLPHSFNRDKKISERPLWELQRVPIGASGIWPVNRHVFTDDQFAPADVLQPSGTPVTSSSSDDDEFSSDNATQNENERFKRLLEELSPRAKKSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -