Laer008352.1
Basic Information
- Insect
- Liodrosophila aerea
- Gene Symbol
- -
- Assembly
- GCA_035045005.1
- Location
- JAWNNL010000815.1:38352-43142[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.03 2.2 9.0 0.7 1 23 145 167 145 167 0.97 2 13 0.00076 0.056 14.0 3.0 1 23 398 420 398 420 0.98 3 13 0.51 37 5.2 0.2 1 23 475 498 475 498 0.95 4 13 0.0012 0.087 13.5 1.9 3 23 776 796 775 796 0.92 5 13 0.047 3.5 8.4 1.4 1 23 802 825 802 825 0.98 6 13 1.1 81 4.1 1.1 2 23 862 883 861 884 0.90 7 13 0.0041 0.3 11.7 0.6 1 23 905 928 905 928 0.97 8 13 0.016 1.2 9.9 0.5 1 21 1099 1119 1099 1122 0.89 9 13 0.00029 0.022 15.3 5.7 1 23 1135 1157 1135 1157 0.97 10 13 0.0031 0.22 12.1 0.3 2 23 1163 1185 1162 1185 0.91 11 13 0.021 1.6 9.5 3.8 2 23 1192 1216 1191 1216 0.91 12 13 0.086 6.3 7.6 0.1 1 23 1221 1243 1221 1243 0.95 13 13 0.071 5.2 7.8 1.6 1 23 1249 1272 1249 1272 0.96
Sequence Information
- Coding Sequence
- ATGGCATATAAACGTATAAAACGGGACGGCATGGAAGTGGATTATAAGTTTGTATGTCGCTGTTGCTTGAAATCCGAATCGGAATTCTTTAAGCTGGACGCGCTGACAGACTGTGGCACTGTTGATATAGGAGGCGATAATGACGCGTCCTCTACAAAAATACCCCTAATACGATTACTACTATTCTGCATGCGCACGGAAAATGTGCCGGAACTGCCGCAGTATATTTGTGTTGAATGCAGGAAAAGTCTGCAAATTGCGTAtctttttatacaaaattctttGAGGGCCCATGAAATCCTATGTCGTAAACTATGCCCAGTTAAGGGAAACACCACAACGCGACTTAATGGTCAGCAATCACTAACATTCGAGGCAATCGACAAAAATGACGACACAATCGAGTTGAAGCCCCTGAAGTCCAAAACGCGACACGAATGCAAAGTATGCGGCAAGATTAGTTATAGTCGTCTGGAGCAAGCACAGCACATGCTTATGCACCCAGACGCCTCTCAGCATTCGTGCAAATTGTGTAAGTTTGTGGCGCTAAAACCCCGCTTGTTGCTACTACATTATCGAAGAGCGCATGGATTGATGGAATCTCAAATAGAACAGCACATCAAGTTAAGCAAAAGGAAAGCTTTGGAGATGACATCAAGAACAGGAACAAATGTGATAACTTCAACACCAGCTACGGCAATAACAACTGAAGATGATGGTCAGGTGAAAGTTTGCACTTTAGAGGATATAGAGCTGCTAATTCCGACTGTTTTGAGGCCCGAGGATTTTTCAAACCCTAAATCGCATGCAGATCTGCTGCAGTGCagcaataaacaaattactaCGTTCTCCACTTTGTCCGGAGCAACTACAATCCCAGCTGAACCAACCATCGCTGCGAGCAACAGAGACAATATGAGCATTGGATCTGAGTTTTTGGTTATGGCCGATGGTTCGTTACAGCAAATAAACGATTCTGAAGTCGTGTTTGAATACATCGACGATATTAAAAACACCAGTTCGACGGCAACTAATATAAGCTTGCATAATCTACTATCCGACACAAATAAATCGGACACATCCATTGGTAATATGGATATTGATATGGGTGAACTGGTGGAAGAGTCGTTGCCACATATAATAGttaaGCCCTGCTTAAAACCAGGACCAGGTTCACCGACTGCCCTTAAACATAAATGTACCATGTGCACGAAAGCATTTCCCACAGTAACTCGCCTTAAATCCCATCAATTAACTCATAGTCatTTGCCTAAATTTTATTGCGCTCAGTGTCCATTTTTCTCGCTACGCAGTGCAGATCTTATACAGCATAATACTGAGAAGCACAATTCATCTGTTGACAGtgacacaaacaacaaagcaaacatATTGGACAAATCtccacaaaacaaaagtcgcATCTATTCGTGCGACATGTGTCTATTCGAAGCACCAAGCAGCGGTACGCTACGAATTCACTACAGGGATAAGCATCTGATACATCCCACCGAGGTACAAGTGCGTCCCAGTTGGGAACATGAGATGCGGGAAATTAGCGACGTCAGCTCGTCTCTGGCCTCCTCTCCGTTGAAAGACTCTCAGGCAGTCAAGCCGCCTATCCCACTGGgtattaaatATccacctgcagcagcagcaacggctgAAATACCCACATCGATAGATGCAATGGAGGTATCAGTGGCAAAACCAACAACGCAGCCACAAGTAACAACCACGTCTGTGGTTACACCAACTGGCGAGACAAATGTAATTGTGGATGCCACTTCGTTATTTTATCCACCAGctgcaacaccaacaacagctgcaacttcATTGGATACATATCCCGAGCAAACTTTTGCGACGGAACCAACAGCCTCAACATCAGCAGTAACTGTGACATATGAAACAAACAGCTTATTGCCAAGGCCTGTTGCAGTCGCAACCATAACAACACCACCTGCAACAGGAACAGTCCCTGCTGTAAGAAATCCCACTTCGACCAACATAGATATGCAGGAGTTCATTGATAATTCTGATGTGGCAGCTATTTGCACTATACCCGCTGATGATATGCCTGTGGTCGATGGCGATgacattgttatcgataacaataacataaGTCTCGATTTTGATACAGAACATTTATTCGAAGATTTCGAAGAAGAAGTTGGCGAGGACGAGGATGACGAAGAGGATGCTGAGAATGATGATGagaatgataataatgatgctGAAACGGATCAAAATTTACTACTGACCAGTGACGATGACGATGTCGATGATTTTGATGATGAGCAATCAAAAAATCTACAGAAACCATATTGCATCTATTGCAACAAGAAGTTTACCAGCCAATATAAGTTTGAAAATCACATGTTTGTGCATCGCGGTTTAGCACCGTATCGCTGTGAGCTCTGCaccaatttgtataatatgaAGCGTCTGCTTATACGGCACTACAAGACGGTGCACAAACGAATGCCCAGCAGGGACATGGTTCAAGCCAAAGGCGATAAGGTAACCGTGCCTCAATCATCCATCGAAAAGGTGATCGTTAATGTTGCCAAAGCTCCCATGTTGATGTGCGCTAAATGTCCCTACGAATGTGAGCTTGAGGCTGATATGCGGAAGCATCTAAATGCTCATCATGGCATTAATGATGGCGTATCCATACATGCCAACGAAGTGTTTATCATACGTAaattgcCTTACGAGTGTCCACGCTGCATTCGTTCATTTGCCGCCAATCGGACGCTTACTCGCCACTTGCAACGCAGTCACTTGATAGACACAGTCATTGAGATGCAGACGAATGCATTGACAAGTAGCAAAAGCTCAACTACGACTACTCCTACAACCTCTGGTGAGACCAACGATGTCGATGGCGACGTTGATGAAAAATTTGTAGAAAAAGCTTCAAGTCCTGACACCGGAATTGAGACGGACAATGCAGAAACGGATCTGAAAATGGAACACAGCACACGAAGAACTATAGAGGATAATGATACCACAACTACGGAGGAAATCGAAACATCAACAGTTACAACAATAGCAGAAACAACAGCTACAAACGCAACCACAAGTGTTGATTCATCGCTCTTTCCAACGCCCACACCTTTTGACTTTGAGTTGGACTTTATGGGCAATGGCACGACGCAACTCAAGAATAACACCGATAGTTTGGTGTCGAGCACAAGTTTACTCTTAAATGATTGCGACAAGCTGTGGGCAGACGGGCTAGAGCCTTCGCCAGCGAAGGAGTTACGTTCACGCCTGCCGCGAACGCCAATTTTTGTGTGCAAGCAATGCAATCAAACATTCGATGAACTGGACAAATTGCTGCAGCATGAGGCGGATAAACATTCCAATGGCACGGAGTCGCCACAAAACATTTACAAGCATCATTGCAACGTATGCAACACTTCGTTTCGCACGATATCCTTGCTAAACTATCACATGAAACGCCATGCCACACCCAAGTTACAGTGTAAGCAATGTCTGAAAAAGTTTACTCTCAGTTCCGATTTGGAACTACATGTAGAGGAGGAGCATCGAGAGCATATGCCACTGAAATGCAACATTGATGGCTGCATAAAGACTTTTAACTATAAACATCATTTGAAACGTCATCAGACGGCATCCCATACGCGTGTACAGTATATCTGTCCTGAGTGTGGCAGAAATATGTTGACCAGCCTGCAACTGAGGAACCATATGTCTGCACATAAAGCTCCGCATGCCTATAAGTGCCCAAAATGCATTCGCACCTATATGCGTCGGAAGCCATTCCGCCGCCATGCGCTGCGTGAGCATAAATGGGATCTGACCGAAgatgaattaaatgaaatctgTACCGAAAATGAAGGTCCGATCAAGGTTGTCAAAAAATCTATGCGAAGATCTGTTAAAATAGAAACGGAGTCCGATTAG
- Protein Sequence
- MAYKRIKRDGMEVDYKFVCRCCLKSESEFFKLDALTDCGTVDIGGDNDASSTKIPLIRLLLFCMRTENVPELPQYICVECRKSLQIAYLFIQNSLRAHEILCRKLCPVKGNTTTRLNGQQSLTFEAIDKNDDTIELKPLKSKTRHECKVCGKISYSRLEQAQHMLMHPDASQHSCKLCKFVALKPRLLLLHYRRAHGLMESQIEQHIKLSKRKALEMTSRTGTNVITSTPATAITTEDDGQVKVCTLEDIELLIPTVLRPEDFSNPKSHADLLQCSNKQITTFSTLSGATTIPAEPTIAASNRDNMSIGSEFLVMADGSLQQINDSEVVFEYIDDIKNTSSTATNISLHNLLSDTNKSDTSIGNMDIDMGELVEESLPHIIVKPCLKPGPGSPTALKHKCTMCTKAFPTVTRLKSHQLTHSHLPKFYCAQCPFFSLRSADLIQHNTEKHNSSVDSDTNNKANILDKSPQNKSRIYSCDMCLFEAPSSGTLRIHYRDKHLIHPTEVQVRPSWEHEMREISDVSSSLASSPLKDSQAVKPPIPLGIKYPPAAAATAEIPTSIDAMEVSVAKPTTQPQVTTTSVVTPTGETNVIVDATSLFYPPAATPTTAATSLDTYPEQTFATEPTASTSAVTVTYETNSLLPRPVAVATITTPPATGTVPAVRNPTSTNIDMQEFIDNSDVAAICTIPADDMPVVDGDDIVIDNNNISLDFDTEHLFEDFEEEVGEDEDDEEDAENDDENDNNDAETDQNLLLTSDDDDVDDFDDEQSKNLQKPYCIYCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKRMPSRDMVQAKGDKVTVPQSSIEKVIVNVAKAPMLMCAKCPYECELEADMRKHLNAHHGINDGVSIHANEVFIIRKLPYECPRCIRSFAANRTLTRHLQRSHLIDTVIEMQTNALTSSKSSTTTTPTTSGETNDVDGDVDEKFVEKASSPDTGIETDNAETDLKMEHSTRRTIEDNDTTTTEEIETSTVTTIAETTATNATTSVDSSLFPTPTPFDFELDFMGNGTTQLKNNTDSLVSSTSLLLNDCDKLWADGLEPSPAKELRSRLPRTPIFVCKQCNQTFDELDKLLQHEADKHSNGTESPQNIYKHHCNVCNTSFRTISLLNYHMKRHATPKLQCKQCLKKFTLSSDLELHVEEEHREHMPLKCNIDGCIKTFNYKHHLKRHQTASHTRVQYICPECGRNMLTSLQLRNHMSAHKAPHAYKCPKCIRTYMRRKPFRRHALREHKWDLTEDELNEICTENEGPIKVVKKSMRRSVKIETESD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -