Laer003904.1
Basic Information
- Insect
- Liodrosophila aerea
- Gene Symbol
- -
- Assembly
- GCA_035045005.1
- Location
- JAWNNL010000520.1:229319-232446[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00015 0.011 16.3 3.0 2 23 175 197 174 197 0.96 2 15 0.00099 0.073 13.7 2.0 1 23 236 259 236 259 0.96 3 15 0.0047 0.35 11.6 3.1 1 23 324 347 324 347 0.96 4 15 0.016 1.2 9.9 0.5 2 23 397 418 396 418 0.96 5 15 1.5 1.1e+02 3.7 0.7 1 21 531 551 531 552 0.88 6 15 0.037 2.8 8.7 1.0 1 23 561 583 561 583 0.94 7 15 0.00028 0.021 15.4 2.1 1 23 590 612 590 613 0.95 8 15 0.00042 0.031 14.9 1.1 2 23 621 642 620 642 0.96 9 15 0.0008 0.059 14.0 0.3 3 22 670 689 668 692 0.89 10 15 0.0015 0.11 13.2 1.4 1 23 727 750 727 750 0.96 11 15 0.0014 0.11 13.2 1.2 1 23 787 810 787 810 0.97 12 15 1.6e-05 0.0012 19.3 0.5 1 23 829 852 829 852 0.97 13 15 0.81 60 4.5 0.1 1 23 862 884 862 884 0.91 14 15 7.5e-05 0.0055 17.2 1.8 1 23 890 912 890 912 0.99 15 15 1.6e-05 0.0012 19.3 1.4 1 23 918 940 918 940 0.98
Sequence Information
- Coding Sequence
- ATGACGAGAACATGTAGAATCTGCGGTGGTTCAGATGGGCGCTATTGGATAGAGACGCCACTTCGTAAATATGCTGAGAAAACGTTCAACCAATTGCTTTTAGAGTTAACCAGACTTGAGGTCGCCTTAAGCCAAGTTGACAAACTACCGCCCTGGATCTGTCGCACCTGTGCTACCAGATTGGAAAATGCCTATGACTTTGTGCTGCAGGCCCGACAAACACATCAGCTCTGGCTCCAGAAGCTGTCAACAGATGTAGGTCGGGAGGACCCCGAAACAGGGGCTTTGGAATGTTTACGCGAGACACCAATACAATTGTTGGATATAGAAGGTGTTACGATTAAAATGGAAGAACCATCTGAACCAGTCGTGCCAACATCTGACCCAACCAACTCTGTTGATCCTTTAATTAAAAGGAATATCGTTGATGATCCAAGTCccgatgaagatgatgatgacgatgtgCCGCTTAAGCAACGCAAGGATATAAGCACAAAGTTACCTACGCTTCACAAACTCAACAAATGCAATATATGTAACAGATCCTTTAAATTCGTAACGAATCTCTTCCGGCACAAACAGCGAGAGCATAGTCCTGATACCTTAAGAAGGCAGTCAGTCCCGACACCATTACCAAATCATGCGCTAAAGAGTTCCACTTCAGCACGTGGCAATTTAGAATTGAACAATGATGACGGTAATTACTACAAGTGCGACCAGTGCGATAAATCCTACAAGTACATTATGTTACTCCTCAAGCACAAGGAAAAAACCCACAACATGACTCAGATGCCACAGAAGCCAAAACCAAGCAAAAGCATAGTTTCCAATGCAGCTCAAGCATCCGGTATAAAAGCAGTTCATCGGCCACGTTCAAGAGCTATTGTGACAGACGCGTTAGTCCATAGCCTAATTAAAGAGGTCAAAACACCTGAGGAGGACGAGTCGGACACAGACACGGAAAATTACTACAAGTGTGATCAATGTGAGCGATCCTACAAATACATTGTGAGTTTgatcaaacacaaacacaaggAGCACACTGAGTTTACGGAtaatgatgaagatgaagcCACCTCGTCCCACAATGCAACCGCTGCTAATACCTCGCCAAAACCTTCACGCATTGATCGTCGTGTTAAGGGCTTTGATTTGCATCGCTGCAGACCAAATGGTTCCAAGGAGATAAAGTGCATGATTTGCCTACGTCGATTTGTTAAAATGCGAGAGCTACGTGAGCACCTTAAGGCACATCCCAAAGACTTCTCATTCGATGCTCATGGTGAGCCCATTGAACGCATTGCCGAAGGCTTCTTCAAGACCGCTGTAGAGTCTACTGCTGCGGGATTGAAAAAACGCATTTTCAATGATCTCAAGATGGGCTTATACGGCAGGTATTATTCCATAACAAACGAGGCACGCTACGAGATGAACCTGGACAGCTCGGACACAGATAGCGATGGCGAGGGTGATGTTGTGGAACGCCGCAGCTATGCGTGTGAGTTATGCGAGTCACCCAACGCTGTTTGGCCACGTAAATTCCAACTACACGAGCATCATCGACAGATGCACACGTGGTTAGAGGCGCCTTATATCTGTCAACGCTGCGACTCGCGGTTCCTTAGTGCCCAGCTATTGGAACATCATACCCAAAAGCTCTGCCAGAATACCCTAAAACGTTTCATGTGCGACAAGTGTCCGCAACGCTTCTTTTGGCGCCGAAATCTACGTTCTCATCTTGTTGAACACAAGAATAAGCAAGACAATTATCCATGTGATCAGTGTTCCCGTAGTTTTCAGGATAAGAGTGCCGTGACAAAGCACAAGCTAATGCATCACGATGTAACCAATGAGCTAATCCCTTGCCGCTGGTGTACACGCACCTTTTATCGCCCAGCCTTGTTGCATAAGCACGTACAGCGTCACGGCTTTACGGGGGAGGATCTACCCTTGGCGGAGACACTGCTGGCAGATGCTGCTAAAGCATCCGGACGGAAGACAATCATTTGCAAGCTCTGCGATATGCACTTCGTTAGCATTGCCGATCTCCGTCGTCACATGACGATGCAGGCTCATAGTGATGACGCCTCGAATTACATGATTAGCACGGAGGAGGGTTTTGAAATGCTGCTGGATGAAACGGACGACAGTGATGATGAGACTCATACTAGTCGAAGCTACAAGTGCGATCTCTGCGAAACGACTTTCCAACGTCGGCGCGACATGAACGAGCATCAGTATTCCGTACACACCTTTGACAAGCTTCCCCACTGCTGTGACCAATGCATTTACAAAACCGTCGACAAGACTATGCTGGAACATCATAAGCGCACTCAGTGCCAAAACGAATTGAAGAAGTTCAAGTGTTCGCGCTGCGGCTACAAGTTCATGTGGTCCAAGAACTTGGAGCAACACATGGCCAGTCAACATTCGAAAACATCGAACCAAACTCCGGTGCCGACGAAGCGAAGTCGTCGGTTCAGGTACCAATGTCCACATTGTTGGCGATCGTTTGTGGTTCAGCCCAGCCTGGACAAACACATACGTGATATGCATGTGGCAAAGAAGAATCCTGGAAAGAAGTATTTGTGTTCTCTCTGTGGACTAGAGGCACTAACGCCCAATAAGCTGAGCATACATATGCAGCGCCATAATGGCGAGAAACCATTCAAATGCGATCTCTGTGAAATGTCATTTACTGTGTTTTACGAGCTAAAGGTTCATCGCCGCAAGCACACAGGCGAACGTCCCTATCAGTGCACCTTCTGTTCCAAGGATTTCGCCAGACCGGATAAGTTAAGGCGacatgtgtatatgcataGCGTTAAGCGTTAG
- Protein Sequence
- MTRTCRICGGSDGRYWIETPLRKYAEKTFNQLLLELTRLEVALSQVDKLPPWICRTCATRLENAYDFVLQARQTHQLWLQKLSTDVGREDPETGALECLRETPIQLLDIEGVTIKMEEPSEPVVPTSDPTNSVDPLIKRNIVDDPSPDEDDDDDVPLKQRKDISTKLPTLHKLNKCNICNRSFKFVTNLFRHKQREHSPDTLRRQSVPTPLPNHALKSSTSARGNLELNNDDGNYYKCDQCDKSYKYIMLLLKHKEKTHNMTQMPQKPKPSKSIVSNAAQASGIKAVHRPRSRAIVTDALVHSLIKEVKTPEEDESDTDTENYYKCDQCERSYKYIVSLIKHKHKEHTEFTDNDEDEATSSHNATAANTSPKPSRIDRRVKGFDLHRCRPNGSKEIKCMICLRRFVKMRELREHLKAHPKDFSFDAHGEPIERIAEGFFKTAVESTAAGLKKRIFNDLKMGLYGRYYSITNEARYEMNLDSSDTDSDGEGDVVERRSYACELCESPNAVWPRKFQLHEHHRQMHTWLEAPYICQRCDSRFLSAQLLEHHTQKLCQNTLKRFMCDKCPQRFFWRRNLRSHLVEHKNKQDNYPCDQCSRSFQDKSAVTKHKLMHHDVTNELIPCRWCTRTFYRPALLHKHVQRHGFTGEDLPLAETLLADAAKASGRKTIICKLCDMHFVSIADLRRHMTMQAHSDDASNYMISTEEGFEMLLDETDDSDDETHTSRSYKCDLCETTFQRRRDMNEHQYSVHTFDKLPHCCDQCIYKTVDKTMLEHHKRTQCQNELKKFKCSRCGYKFMWSKNLEQHMASQHSKTSNQTPVPTKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLEALTPNKLSIHMQRHNGEKPFKCDLCEMSFTVFYELKVHRRKHTGERPYQCTFCSKDFARPDKLRRHVYMHSVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00832360;
- 90% Identity
- -
- 80% Identity
- -