Laer013919.1
Basic Information
- Insect
- Liodrosophila aerea
- Gene Symbol
- Znf574
- Assembly
- GCA_035045005.1
- Location
- JAWNNL010001167.1:1083241-1085391[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.036 2.7 8.8 0.6 2 23 303 325 302 325 0.96 2 10 1.1 82 4.1 0.2 6 23 335 352 335 352 0.98 3 10 0.00023 0.017 15.7 1.9 1 23 358 380 358 380 0.98 4 10 0.00022 0.016 15.8 0.9 1 23 388 411 388 411 0.89 5 10 6.7e-05 0.005 17.4 5.0 1 23 419 442 419 442 0.96 6 10 2.8e-05 0.002 18.6 0.9 3 23 450 471 448 471 0.92 7 10 0.00062 0.046 14.3 0.2 2 23 483 505 482 505 0.97 8 10 1e-05 0.00076 19.9 3.6 1 23 512 535 512 535 0.95 9 10 2.3e-06 0.00017 22.0 1.2 1 23 541 563 541 563 0.98 10 10 9.6e-05 0.0071 16.9 2.8 1 23 569 592 569 592 0.97
Sequence Information
- Coding Sequence
- ATGGTTGCCTgtgtactttgctttgattgCTGCAAAGTCGGAGCTTCCTATAAGTTAAGCAGCGAGGGAGCAGAGCAAGAAGAGATATGTCACCAGTGTTGGAATTGTGTGAGCACCTTTAACGCATTTTACGAGCATGTCTATAATGTGCACCAGGAACGAAATGGATAtgtcaaaaatatttctatcGAGTTCTGTGGCGAGGCGGAGACATCGAATACACTTGCCTTTGGGGAGGAATTAGATGGTCTTGAGGAAGATTTCTTAGCAACTGATAATGTCAAAGTGGAGGTAAATGAGTTGGAACCATTAAACAAGCTCGATCTGATTGAGGAAACAGAGCTCACAGAGACTAAAACCGCAAAACGCATTCCTACCAATACTCTGCCAGCATCAAAACGGCgagataaaaaagaaaaattgtctGTCGTCAGTGATTTAGATGGAGATGTCCCTCTAGCGTCAGAAAATCCCACAAAAAGACTAGCTGCAAGTAATGAAGAATCGTATTCCAAGGGTCCACAACTTCGAAGAAGCACTCGACTGGGACGACCACGAACGAAAACACCGCCAGCATCACCTCCAGAAAGTTTGAAGAATGAGCTGGAATCGGATGATGACCATGATAATGATAGAGACATTGCACCTGAGGCAGCGTTTTGTCCAGAAGACAGTGAGAGTTCTAGTGAGAGCAGTGATAACAACTCCAACGATAGTTTACCCGATGTAGAGCCAGAGGAACGTTATGCAGAAATACCCAAACGGGTTATAGTCAAACCTAAAAAATATCGGAAACGCATTAAACCATTGGTACCACCTGTGCGCATGAGTCGTGAAGAGATTGCGAGGCGGAAAgaagaacaaaataaattcgaTAAGATTATATTCGATTTTTTCAAGAAATTACAATGTCATATATGCAATCTGCTGGTGGCAAATTTCGGAGATATGAGACTTCATCAGCGAATGTCCCATAATATAGAAAATGGATATATAACTTGCTGTGGTCGCAAGTTCCACGTGCGCCGACCTCTGGTTGACCATATACTGGTACATAAGAATCCTGAACACTTTATGTGCAGTCAATGCGGCCGATGCTTTCAGGAGTCGAAAGCTCTGGAGACCCATGAACTCACGCACACAGATAAGGAAAAGCCGACGTATCAGTGCGACAAGTGTCCCAAGACGTTCAAAACAAAGGCTGGTGTCGAGTATCATAATGCGTCTAAGCATGTTCCCAAGTCGGATTTCCAGCACAGTTGCCCAGagtgcaaaaaaaaGTACCCTACGGCGTACAAACTGAAGAAACATCTACGCCATATGCACGACCCGGAGACAGCCATTATCTGCGATAAGTGCGGAAAAACTATCCGCACTCAAGCGAATCTCAAGAGACATCACGAGCTAGAACATTCTGACATCCCACGTCCCAAGCCGGATCCAGTGCAGTGCGAAATATGCGGTACATGGCTACGTCAATTGTCTAGCCTCAAGAAGCACATGGACACTGTTCATGGAtcacaagaagaagagcatCGCTGTCCCATCTGCGACAAAAAATCATCAAACTCGAGTGCTCTCAAACGACACATTCACTACAATCATGAATGTGAAAGAAAGTTCCGTTGTACCATGTGTGAAAAGGCCTTCAAGAGACCACAAGATTTAAGAgaacacacatccacacacactggTGAGGTGCTCTATACCTGTCCCAACTGCCCACAAACATTCTTTTCCAATGCCAATATGCACAAACATCGTCAGCGTCTTCATCGCGCTCAATGGGAAGCGGATCGGAAGAAACCCCTCCCGCCTAATATGATGCAACCAAGGAAGAAACGCAGGACAGACGCAGAATCGCCTCTTTCTGATGTGGATATAAAACAGGAGCATCTAATGcaatag
- Protein Sequence
- MVACVLCFDCCKVGASYKLSSEGAEQEEICHQCWNCVSTFNAFYEHVYNVHQERNGYVKNISIEFCGEAETSNTLAFGEELDGLEEDFLATDNVKVEVNELEPLNKLDLIEETELTETKTAKRIPTNTLPASKRRDKKEKLSVVSDLDGDVPLASENPTKRLAASNEESYSKGPQLRRSTRLGRPRTKTPPASPPESLKNELESDDDHDNDRDIAPEAAFCPEDSESSSESSDNNSNDSLPDVEPEERYAEIPKRVIVKPKKYRKRIKPLVPPVRMSREEIARRKEEQNKFDKIIFDFFKKLQCHICNLLVANFGDMRLHQRMSHNIENGYITCCGRKFHVRRPLVDHILVHKNPEHFMCSQCGRCFQESKALETHELTHTDKEKPTYQCDKCPKTFKTKAGVEYHNASKHVPKSDFQHSCPECKKKYPTAYKLKKHLRHMHDPETAIICDKCGKTIRTQANLKRHHELEHSDIPRPKPDPVQCEICGTWLRQLSSLKKHMDTVHGSQEEEHRCPICDKKSSNSSALKRHIHYNHECERKFRCTMCEKAFKRPQDLREHTSTHTGEVLYTCPNCPQTFFSNANMHKHRQRLHRAQWEADRKKPLPPNMMQPRKKRRTDAESPLSDVDIKQEHLMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00901697;
- 90% Identity
- -
- 80% Identity
- -