Basic Information

Insect: Liodrosophila aerea
Gene Symbol: -
Assembly: GCA_035045005.1
Location: JAWNNL010000055.1:301817-303508[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0014 0.1 13.2 0.2 1 21 211 231 211 234 0.90

2 8 1.7e-06 0.00013 22.4 1.1 2 23 256 278 255 278 0.93

3 8 0.00013 0.0096 16.5 0.3 2 23 305 325 305 325 0.97

4 8 6.8e-06 0.0005 20.5 1.3 1 23 331 353 331 353 0.98

5 8 3e-06 0.00022 21.6 1.2 2 23 360 381 359 381 0.97

6 8 3e-08 2.2e-06 27.9 1.3 1 23 387 409 387 409 0.99

7 8 0.0044 0.33 11.6 1.6 1 21 415 435 415 439 0.88

8 8 0.012 0.91 10.2 0.1 1 23 487 511 487 511 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0014	0.1	13.2	0.2	1	21	211	231	211	234	0.90
2	8	1.7e-06	0.00013	22.4	1.1	2	23	256	278	255	278	0.93
3	8	0.00013	0.0096	16.5	0.3	2	23	305	325	305	325	0.97
4	8	6.8e-06	0.0005	20.5	1.3	1	23	331	353	331	353	0.98
5	8	3e-06	0.00022	21.6	1.2	2	23	360	381	359	381	0.97
6	8	3e-08	2.2e-06	27.9	1.3	1	23	387	409	387	409	0.99
7	8	0.0044	0.33	11.6	1.6	1	21	415	435	415	439	0.88
8	8	0.012	0.91	10.2	0.1	1	23	487	511	487	511	0.91

Sequence Information

Coding Sequence: ATGAGTATAGCTAAGGATGAAGTTCCAGGGACCGTGAAcgttaatatttgtttaaactcGCGTTCTTGTCGCGTTTGTCTGGAAACACATGAAACCAGCCTGTGCCTTCGCGACGAAATTGAGTACAATGATCTGAATGTGGAACTTTGGCAATTGCTGGAAAGTGTATCCAATGTAAAGTGCTCTTGGAACGAGCCAAATTTGCCCACACAGCTGTGCCAGAACTGCACTCGACGCCTCATAAGCGCCTATGAATTTATTCGTGAAGTCGAACGATCTCAGCAGACTCTGTTAGAATTGTGCTGCAGTCTGGTGGAGGAGCAAGCTACTTTGGATGTTGAGGATGTGAAAGTGGAAGAAAATGAGGATAAAAATGAGCAGCATGAAGTTTTACAACTAGATGAATGCGAGGGAGTTATTGAGATGCATGAAGTAGAATTAGCGCCATCTGATGAGCCGGCTACCGAACCTGATCCAGAGAATGAGCTGAATGTTGAAGCAGTGAACTTCGATCTGGAACTGAACGAGTTTGCTGATGATTCCGAAACTGAAGTACATAATGGGGACGATCCTGCAGAGGAGCAACCTTCACAGTTGGGCATGCGTCTCACGCATTCGCAAAGCTTTGCATATAAATGTGCTAGTTGCCCACGAAtctttgccaaaaataaatctttGGCGCGACATTTTGCAGCAGCTCACAGCCAATCCGCAAATATGGCCGCACAGGAGCTTGCAAAGGAGCACAGCAGCAGTGGGGCACTAATCTGCGAACATTGTCCACGCATTTTTAAACGACAGGATACCTTACGTCGTCACATGATCGCATTTCATCCTGAAGTGGTTGCCGAAAACGGAAATACAGAAGATGCCATAAGCCCTGCGCCACCAAAGCGAGCAGCCAAGCGGCGAGAATGTCCTCATTGTGGAATTAGTTTTCCTGTCTCCAGTCTCACCATACACATACGTCGCCATACTGGCGAAAATCCTTATAAATGCGATCAGTGCAATAAGGCCTTCCCGCGTAGTCAAGATCTTAGCCTGCATAAGCGTCAACACACAGGCGAGCGTCCCAGTGAGTGCACGATTTGCAccaaaaaatttatttctcAAAATAAGCTAGCTCGTCACATGCGATTACACACTGGACAGCGGCCGTATTCCTGTGATAAGTGTGATAAGAGTTTCGTGCAATCGAACGATCTAAAAATTCATATGCGACGCCACACAGGTGAACGACCCTACACATGTGAAGTTTGTGGCAAAAGCTTCGTCTGCGGCTCACTTTTAAATATCCATCGCAATCAAAAACGACACTATGCGACAGTCAAGGAAGGCGATGATGACACTGAACCTGATCCATACGAGAACAGTCGGGTGAACAAGCGTCGGGCGAAGGATATTGAACGAATGCGGTTACAACGCCTGAATGATACACGACCAACGATGTTCAAACCATACAGGTGTGGCGTATGTGGAGACAACTTCAAAAGTGGTGCCCTACTCACAATTCATCGAAACAAGATGGCGCACTACGAGATGGGTGAAGTGAACTATGGAGACCCCTACGAACAAAggaacaaacaacaacacaccaAAACTGAAGATAATGAGGATTAG
Protein Sequence: MSIAKDEVPGTVNVNICLNSRSCRVCLETHETSLCLRDEIEYNDLNVELWQLLESVSNVKCSWNEPNLPTQLCQNCTRRLISAYEFIREVERSQQTLLELCCSLVEEQATLDVEDVKVEENEDKNEQHEVLQLDECEGVIEMHEVELAPSDEPATEPDPENELNVEAVNFDLELNEFADDSETEVHNGDDPAEEQPSQLGMRLTHSQSFAYKCASCPRIFAKNKSLARHFAAAHSQSANMAAQELAKEHSSSGALICEHCPRIFKRQDTLRRHMIAFHPEVVAENGNTEDAISPAPPKRAAKRRECPHCGISFPVSSLTIHIRRHTGENPYKCDQCNKAFPRSQDLSLHKRQHTGERPSECTICTKKFISQNKLARHMRLHTGQRPYSCDKCDKSFVQSNDLKIHMRRHTGERPYTCEVCGKSFVCGSLLNIHRNQKRHYATVKEGDDDTEPDPYENSRVNKRRAKDIERMRLQRLNDTRPTMFKPYRCGVCGDNFKSGALLTIHRNKMAHYEMGEVNYGDPYEQRNKQQHTKTEDNED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00832346;
90% Identity: -
80% Identity: -