Laer002638.1
Basic Information
- Insect
- Liodrosophila aerea
- Gene Symbol
- -
- Assembly
- GCA_035045005.1
- Location
- JAWNNL010000392.1:125355-127927[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0079 0.58 10.8 0.3 2 23 14 35 13 35 0.96 2 14 0.0034 0.25 12.0 4.0 1 23 41 64 41 64 0.98 3 14 0.047 3.5 8.4 0.1 1 23 67 93 67 93 0.93 4 14 0.0027 0.2 12.3 0.1 2 23 110 131 109 131 0.91 5 14 1.2e-05 0.00087 19.7 0.2 2 22 138 158 137 158 0.95 6 14 0.087 6.4 7.6 2.1 2 23 421 443 420 443 0.95 7 14 0.039 2.8 8.7 0.8 1 23 468 490 468 490 0.97 8 14 0.092 6.7 7.5 3.1 1 23 498 522 498 522 0.90 9 14 0.22 16 6.3 2.1 2 23 527 549 526 549 0.95 10 14 0.00032 0.023 15.2 0.2 2 21 562 581 561 582 0.93 11 14 0.0027 0.2 12.3 0.3 1 23 590 612 590 612 0.98 12 14 9.5e-07 7e-05 23.2 2.9 1 23 618 641 618 641 0.98 13 14 3.9e-05 0.0029 18.1 1.4 1 23 647 669 647 669 0.98 14 14 0.00036 0.027 15.1 2.9 1 23 675 697 675 697 0.95
Sequence Information
- Coding Sequence
- ATGCTAGTGGAAATCACAACAGATGGCATTCCAAAGCTCCATTGCCCTGTTTGCAACAAGGCGCTTGTGTCGCTTGCCGGCTATGTGAAGCATGTGAAAAAACATGAGCCGCCGGGTGGCTTCCAATGCCGCTACTGTGATGCCCAATACTGCCACGATGAGGAACTGAAGGACCATATTAAAACCAGTCACACATCTTTCAGCTGCACTGTGTGCAAGAGCGATGATCTCGCATTCACCACTAAAGAGGAGCTGGATACCCATATGGAGGAGGCGCATCAGGATCGCAAGTTTAATGTGAGCTTGGACAGTAGTCCAAGGCCTTCGATGTGTGAGATTTGCGGTAAATCATTTCCTGATCGCGAGAGCAGCCTAGCACATCAAGCGGAACATGAGGCTGCACTGACTGTATCGTGCCCCGTCTGTGCCAAGGGCTATTCCTCGCAGTCCAATCTGACGAAACATCAACGCAAGAATCCGGATAGCTGTGGACGTTTGCTTCCTAAGCGCACATCAGCGCCTGCAGCGCCACAGACTATTGGCTCCGCCAAGAAGAAACGCGGTAGACCGAAGAAAATAGTCGTAGCTGAATCCTCggaggatgaggatgatgatctTCCTTTGGCGAGCAGAGTGAAAGTGGTGCTGAAGCAGGAAACATCTAGTAATAAGGCACAAAGCGATTCAGGGGAGGAATACCCTGACTTTGAACCCAACAACAGTGATGATGAGCCAGATGCCCAACGATTTAAATTACCAACTCCTGCCACAGTCAAGGTGGAGGCGGTTGATCCAGACTTTGAGTATCAGGACGCAAGTCTTTATGTTAAGGAGGAGGGAAACACCCCGGACATCTATATCAATGAAAAGGACAAGCTGCTTGACGTGCTGCTCAGCACGGACGAGAGTCTCAAACCATTTGAAAACCTTAAAGTAGAACATGCCACGGGAATATTGGATGAAATCGCTGCGGTCCCAATAACGAAGGCAAACAGCTCCGAGAACATGGAAAAGGATGTGCTATCACTTCGGGACATAAATACGGATAGCgacgaagaagacgaagacgacgacgatgatgaagatgatgaagaTTACAGAGCCgccaaacaaaaggcaaccAAATCCACTGGCAAACGAAAATATCGTAAACGCGGAACTGGTAAGGTGGCAGAAGCAGCTGCTAAACGTGTCGCAAAAATCTCCAAAAAAGAGCTCAAGGAGCGTCTGAAGGTGTTGAACAAAATGGAGAAAAGCTGGAAGTGTCCGCACTGTGTTAAGGTCTATCATATTCGCAAGCCATATGAGAAACATTTACGGCTCGATCACAAGATCAGCGAGGATGAAATTAAGGAAATCTTCAAGGATGTGGACGGACACGTAAAGCTTGATGAAGAGGTCTTTAAATGTAAGATTTGTAGTAAAATCTACTTGGTGGAAAAACGACTGGAGACGCACATGAAAGCCCACGGCAAAGATGGAAACCTAATATTTAAGTGTCCCTGCTATTGCAATATCTTCTTCGCCACCAAGGAACTGGCCACCCAACATGCCCACGAACAGCACAAGGAGTTGCTCTACTGCGAGAAGTGCGACAAGTATATGACCGCACACGACAGTCTCAAGAATCATGAACGCAATTACCACGCCAAAAAGGAGCCAAGGAATCTGGCACGTAATCTCATTTGCGATAAATGTGGCAAGAAGTTCAGTGGTCGGACTTCCCTCTCCGATCATGTACGCTCCCAATGCGGGCGTGTACCACTCTATGAATGCAATGTCTGCCGCAAGCGCTTGTCCACGGCAGGTATTCTCAAAACGCACATGCTGCTGCATCAGGCAGACACGCCATATCAGTGCGACAAATGCGGTAAGACCTTCAAGGTGAAGGCACAATACAAGACTCATCTGAAGACACGTCACACAGACTACAAGCCCTACAAGTGCCATCTCTGCCCCAAGGAATATCCATATCGTGAAAGTCTACTGACCCACATGACTGTGCACACTGGCATCAAACGTTTCCTATGCAACAACTGCGGCAAACGCTTCACTTGCATCTCAAATCTACAGGCGCATCGCAAGGTTCATGCCGACACCTGTGGCCAGCTACCGCTGAACCCCAAGGCCACACAATATATGGGCGTACAGCGGGGCAAACTGCTGATGGGTGCCAAGCCAGAGGCAGGCATGGAATATGAGGAGACTAAAACGTTGATTGCACAGGATGTCATTGATCGAGATATGCCCATTGCACAGGAGCTCAACTTTCCATCCGATGGCATAGCACCGTTGGCCACAGTGCCACTTAACTATGCCTCATCACATCTGGTACCACACATTGTGCTGCAGACCATGCAAGCCGAGGCCCAGAGAGCACACCATTAG
- Protein Sequence
- MLVEITTDGIPKLHCPVCNKALVSLAGYVKHVKKHEPPGGFQCRYCDAQYCHDEELKDHIKTSHTSFSCTVCKSDDLAFTTKEELDTHMEEAHQDRKFNVSLDSSPRPSMCEICGKSFPDRESSLAHQAEHEAALTVSCPVCAKGYSSQSNLTKHQRKNPDSCGRLLPKRTSAPAAPQTIGSAKKKRGRPKKIVVAESSEDEDDDLPLASRVKVVLKQETSSNKAQSDSGEEYPDFEPNNSDDEPDAQRFKLPTPATVKVEAVDPDFEYQDASLYVKEEGNTPDIYINEKDKLLDVLLSTDESLKPFENLKVEHATGILDEIAAVPITKANSSENMEKDVLSLRDINTDSDEEDEDDDDDEDDEDYRAAKQKATKSTGKRKYRKRGTGKVAEAAAKRVAKISKKELKERLKVLNKMEKSWKCPHCVKVYHIRKPYEKHLRLDHKISEDEIKEIFKDVDGHVKLDEEVFKCKICSKIYLVEKRLETHMKAHGKDGNLIFKCPCYCNIFFATKELATQHAHEQHKELLYCEKCDKYMTAHDSLKNHERNYHAKKEPRNLARNLICDKCGKKFSGRTSLSDHVRSQCGRVPLYECNVCRKRLSTAGILKTHMLLHQADTPYQCDKCGKTFKVKAQYKTHLKTRHTDYKPYKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNNCGKRFTCISNLQAHRKVHADTCGQLPLNPKATQYMGVQRGKLLMGAKPEAGMEYEETKTLIAQDVIDRDMPIAQELNFPSDGIAPLATVPLNYASSHLVPHIVLQTMQAEAQRAHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00832341;
- 90% Identity
- iTF_00832341;
- 80% Identity
- -