Laer017774.1
Basic Information
- Insect
- Liodrosophila aerea
- Gene Symbol
- ken
- Assembly
- GCA_035045005.1
- Location
- JAWNNL010001507.1:14008-15603[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0013 0.093 13.4 5.0 1 23 186 208 186 208 0.98 2 11 0.16 11 6.8 7.3 1 23 225 247 225 247 0.98 3 11 0.49 36 5.2 8.9 1 19 253 271 253 273 0.96 4 11 8.2e-05 0.006 17.1 1.7 1 23 282 304 282 304 0.93 5 11 9.2e-07 6.8e-05 23.2 1.4 3 23 332 352 331 352 0.97 6 11 6e-05 0.0044 17.5 0.4 2 23 362 383 361 383 0.97 7 11 0.0013 0.097 13.3 3.0 1 20 389 408 389 410 0.95 8 11 5.8e-07 4.2e-05 23.9 1.9 1 23 418 440 418 440 0.98 9 11 0.00023 0.017 15.7 0.3 3 23 448 469 447 469 0.95 10 11 8.2e-05 0.006 17.1 3.2 1 23 475 497 475 497 0.97 11 11 7.4e-07 5.5e-05 23.5 3.6 1 23 503 526 503 526 0.98
Sequence Information
- Coding Sequence
- ATGTCTGAGTTTAATCTATGCGCAATTAAGGAGGAGATTGACATCAAGCCGGTGTACAAGACGTGTATCCAAGATACAGATTCTGCAATCACGTTTAATGAGAGTAATGGAATGTTTCTGTCAAtgaaactatttaattttgatgaaATACTCGATTCAttgttaaatgaaaaatgggaACTGGTGGGCAAACATACCAAGATTGAGCCAAAAGACGAACCAGAAGATGTACTAGAATCCGCGCCAGAGGCCATACCAGATCCCGCACCAGAGTTTGTTCCTGAACTGAAATCAGAGACCGTATCAGAATCCGCACCAGTGACAGTAGCAGAACCCACACCAAAAACAGAAGCATCATCAGAGGCCGATAATGAAGAAGGCAGGTTGTTGGCTCTAATAAGCCCGACGAATAGGCGACGCTCATTGCGTTTAAGAAAACTAACGGAGGACTCTGATAGTCCTCGTTCATCGGAGTTAATTAGCTCAGGATCGCCGGAACCAACCAAACGATCTAAACGCAAACGCTCTACTCTTACTACTCCAGATCGCACACAACATCAATGCGAAGTATGTAAGAAGGAGTTTTCAACTTTAAGAGGTGTTCATAATCACAAGCGTACGCATACGACTGAAGAACTTTCTGCCCTAAAAACTAAGAGTCGCGAGCCACTATATAAGTGTTCTCATTGTTCCAAAACTTTCTTGCATCGGTATATTTATACAACGCATTTACGAGTCCATACTGGAGAACGACCTTttaagtgctccaaatgcttggcctgttttaaaaagaaatttcattTGGTGAGGCATAACTGTGCGTTCCCCACTAAAGGAGGACCCTTCAAGTGTTCCCACTGTGCAAAGGCATTTGCTACAAGTGGACAACTAAAGACTCACAGTACTGCTCATGCCGAAGAGAATCCAATCAATTCATTAGCGAATCGAAAACAACATGTTGCCAGCTACCACGGATCGAAGAATACAGAACCCTGCACCTACTGTAAAAAGAAGTTCATTTCGAAGGCTACTCTAAGGATACACATGAGGTCTCACACCAAAAAGCGTCCCGCGCCATCCCTTAAGTGTCCTTATTGCTCCAAAATGTTAAAGAACCGACCTTATTATGAAGCGCATCTAAGGGTGCACACCGGAGAACGGCCTTACAAGTGCACCAAATGCTCAGCCATCTTTAAATTGAAGTCTCATTTGGTGAGACATACCTGTGCGTTCCCCACTAAAGGAGGACAATTCAAGTGTACTCACTGTCCAAAGGCATTTGCTACAAGCGGACAACTAAGGACTCACCTCACTATGCATGCAGCAAAGCATCCGAATATGTGCCAATATTGTCAAGAAGTATTTGACAAAGTAGACAACTTGAAACAACATATTGACAAGCTGCACACCGCGGGGAATTTACATCCCTGCACCTactgtaaaaaaaattgcGTATCGATGGCTAATCTACGCGTACACATGCGGGGTCACACCGGAGAACGTCCCTTCAAATGTACCCAGTGTCCCCAGGCTTTCAGCTACTCTCACAATCTTTATCGTCACATGCGGCGAGTACACTCTCGAAAATCAACCTAA
- Protein Sequence
- MSEFNLCAIKEEIDIKPVYKTCIQDTDSAITFNESNGMFLSMKLFNFDEILDSLLNEKWELVGKHTKIEPKDEPEDVLESAPEAIPDPAPEFVPELKSETVSESAPVTVAEPTPKTEASSEADNEEGRLLALISPTNRRRSLRLRKLTEDSDSPRSSELISSGSPEPTKRSKRKRSTLTTPDRTQHQCEVCKKEFSTLRGVHNHKRTHTTEELSALKTKSREPLYKCSHCSKTFLHRYIYTTHLRVHTGERPFKCSKCLACFKKKFHLVRHNCAFPTKGGPFKCSHCAKAFATSGQLKTHSTAHAEENPINSLANRKQHVASYHGSKNTEPCTYCKKKFISKATLRIHMRSHTKKRPAPSLKCPYCSKMLKNRPYYEAHLRVHTGERPYKCTKCSAIFKLKSHLVRHTCAFPTKGGQFKCTHCPKAFATSGQLRTHLTMHAAKHPNMCQYCQEVFDKVDNLKQHIDKLHTAGNLHPCTYCKKNCVSMANLRVHMRGHTGERPFKCTQCPQAFSYSHNLYRHMRRVHSRKST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -