Basic Information

Insect: Liodrosophila aerea
Gene Symbol: -
Assembly: GCA_035045005.1
Location: JAWNNL010000509.1:30127-34784[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 8e-05 0.0059 17.1 1.6 1 23 351 373 351 373 0.93

2 9 2e-08 1.4e-06 28.5 2.6 1 23 379 401 379 401 0.98

3 9 8.2e-06 0.0006 20.2 0.8 1 23 407 429 407 429 0.98

4 9 5.8e-06 0.00043 20.7 1.0 1 23 435 457 435 457 0.97

5 9 2.9e-05 0.0021 18.5 1.4 2 23 548 569 547 569 0.96

6 9 3e-09 2.2e-07 31.0 1.6 1 23 575 597 575 597 0.98

7 9 0.0037 0.27 11.9 0.9 3 23 605 625 603 625 0.97

8 9 0.0001 0.0074 16.8 0.9 1 23 631 653 631 653 0.99

9 9 0.016 1.2 9.8 1.1 1 23 660 684 660 684 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	8e-05	0.0059	17.1	1.6	1	23	351	373	351	373	0.93
2	9	2e-08	1.4e-06	28.5	2.6	1	23	379	401	379	401	0.98
3	9	8.2e-06	0.0006	20.2	0.8	1	23	407	429	407	429	0.98
4	9	5.8e-06	0.00043	20.7	1.0	1	23	435	457	435	457	0.97
5	9	2.9e-05	0.0021	18.5	1.4	2	23	548	569	547	569	0.96
6	9	3e-09	2.2e-07	31.0	1.6	1	23	575	597	575	597	0.98
7	9	0.0037	0.27	11.9	0.9	3	23	605	625	603	625	0.97
8	9	0.0001	0.0074	16.8	0.9	1	23	631	653	631	653	0.99
9	9	0.016	1.2	9.8	1.1	1	23	660	684	660	684	0.95

Sequence Information

Coding Sequence: ATGGCCATCAATTTCTCGGCCTCCTTTGCGGCCTGCATAGCGGCAGGCCTGAAGGTTCCCCGCCAGATCATGTACTGCATCACGCAGGACACGGGCCAGCCGTACGTCCTCTACAAGGACTCACAGGATGCGGAACGCAATGGCGCCATTGGCGCGAGTGCCGCCCAGTGGGGCAGCGAAATGTATCCCAACatacagcagcaggcacagcagcaccTCAgcgcccagcagcagcagcaacagcagcagcagcagcaacaacagcagcagcagcagcaacagaatgcCGCAAGTGTCGCTGCGcaggcagcagcggcagcagcagctgcgggtCAGCCACAGAGTCCGCCCGGCGGCCAGGAGCCGCGGGACAATGGCAGCGGCGATGGACGCCAGCAGCAGGTGTCGCCGTCATCCAGTCCGTATCCGtcggtgcagcagcagcagcagcagcagcaacagcgggcGAATGGCAATGCCGATGAAGATGCCATGAATCACCTTGCCAACCAACAGAACTCCGCGCCAAATCCAAACCAAAGCAGCAACGAGCCACAGCACGCGCCCACGAATGGAGGCGAGGGTGCCGGCCAGGCGGGCAATCCTCACGTGCAACAGAATGGGGGAGGAGGTGGCCAGGGGCCGCAGGGTGATCCCAGCAATGGCTTCCAGACCCCCGACTATTATGCGCCGCGTCATGGAGCACCGCAGGGCGGTATGCTGGCGCCACCTGGATTTCCACCGCTGCACTACCTAAACAAGGGCGTGCTGCCAATGGAGCAGAATGGCGAGTCGTACGCACTGCCGGAGCTGCTGCCgggacaacagcagcagcagcaacagcagcagaacgGAGCTCAGCAGCAGAATGGCCAGGCGAATGGCGCGGAGGGTGGAGCGGCAGCAaatggtggtgctggtggtggcggtggtgccaCGGGCGCTGCTGGCGGCGCGGGAACTGGCAGTGGAACTGGAACGGGAGGCGGGAGCGGACGCACGGGACCGGGACGCCCGCACAAGAATAAACCGCACAGTGATCTGAGGCTGTTCAAGTGCCTCACCTGTGGCAAGGACTTCAAGCAGAAGAGCACACTGCTGCAGCACGATCGCATCCACACGGATGCCCGGCCATTCCCTTGCTCGGAATGCGGCAAACGGTTCCGGCAGCAATCGCATCTGACGCAACATCTGCGCATCCATGCGAACGAAAAGCCATTCACCTGCCCGTACTGCTCGCGCAGCTTCCGCCAGCGGGCGATACTCAACCAGCACATACGCATCCATTCGGGTGAGAAGCCCTTCGCCTGCCCCGAGTGCGGCAAGCACTTTCGCCAGAAGGCCATCCTCAATCAGCATGTGCGCACCCACCAAGATGTCTCACCGCATCTCATATTCAAGAATGGACCGCACCCGACGCTCTGGCCATCGGACGTACCATTTCCGGGCGAAGAGACGGACACAAAGGGCGACATTGCCGTGGCCGGTGGAGGTTACCACGACGAGGACTCCTCGGGCACACCCGATGGCAGCGGTGGCCTGCATTATCCGTCGTACTTTAAGGATGGCAAGGGTCAAAAGATATTGCCCGAAGTGCTGCAACACATCGGAGTACGTCCGGCCAACATGCCGCTCTACGTGCGCTGCCCCATCTGCGACAAGGAGTTTAAGCAGAAGACCACTCTGCTACAGCATGGCTGCATACACATCGAATCCCGGCCGTACCCATGCCCGGAGTGTGGCAAACGCTTCCGCCAGCAATCGCATCTCACGCAGCATCTGCGCATCCATACGAACGAGAAGCCCTTCGGCTGCATGTACTGTCCACGATTCTTCCGGCAGCGAACCATACTCAATCAGCACTTACGCATACACACGGGCGAGAAGCCGTACAAGTGCGGGCAGTGTGGCAAGGACTTCCGACAGAAGGCGATACTGGATCAGCACACCCGCACCCACCAGGTAGGCGATCGTCCGTTCTGCTGTCCGATGCCGAATTGTAGACGTCGCTTTGCCACGGAGAACGAGGTGACGAAGCACATCGACAACCACATGAATCCTAACACCACCAAGGtgcgacggcagcagcagcagcagcaacaacagcaacagcagcaacaggtgcagcagcagcagcaggtgcaacagcaacagcagcagcaacagaatgcAGCTGCCTCGGCTGCTGTGGTAGCCAATCATCTGATGAACGATGTCAAAAGCCTGGCCGCCCAGCAATTcctgaacaacaacaatccagCTGCCGTCGACAACAAGGCCAACATATTGCCGGTGCGCAGCATGGCGGCGaatgcggcagcagcagctgctgtggcacagCAATCGGTGGTCAAGAACGAGCTATACTTTCCGCAGTGCTATGGCCCGCCCTTCCAGCATCCCTTCcacgcccagcagcagcaacagcagccgagTGCGGCCCATGCCAACGGTGGCCCCACGCCGCCAGTGACGGTCACGGTGGCCAATGCTGTGGCACCCGGAGTTGTGGTGCAACAGAATGCAGCCACCTCGGTGGTGGCCCAGTGA
Protein Sequence: MAINFSASFAACIAAGLKVPRQIMYCITQDTGQPYVLYKDSQDAERNGAIGASAAQWGSEMYPNIQQQAQQHLSAQQQQQQQQQQQQQQQQQQQNAASVAAQAAAAAAAAGQPQSPPGGQEPRDNGSGDGRQQQVSPSSSPYPSVQQQQQQQQQRANGNADEDAMNHLANQQNSAPNPNQSSNEPQHAPTNGGEGAGQAGNPHVQQNGGGGGQGPQGDPSNGFQTPDYYAPRHGAPQGGMLAPPGFPPLHYLNKGVLPMEQNGESYALPELLPGQQQQQQQQQNGAQQQNGQANGAEGGAAANGGAGGGGGATGAAGGAGTGSGTGTGGGSGRTGPGRPHKNKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHLRIHANEKPFTCPYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPSDVPFPGEETDTKGDIAVAGGGYHDEDSSGTPDGSGGLHYPSYFKDGKGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILDQHTRTHQVGDRPFCCPMPNCRRRFATENEVTKHIDNHMNPNTTKVRRQQQQQQQQQQQQQVQQQQQVQQQQQQQQNAAASAAVVANHLMNDVKSLAAQQFLNNNNPAAVDNKANILPVRSMAANAAAAAAVAQQSVVKNELYFPQCYGPPFQHPFHAQQQQQQPSAAHANGGPTPPVTVTVANAVAPGVVVQQNAATSVVAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00509959;
90% Identity: iTF_00832325;
80% Identity: -