Laer007370.1
Basic Information
- Insect
- Liodrosophila aerea
- Gene Symbol
- -
- Assembly
- GCA_035045005.1
- Location
- JAWNNL010000767.1:1040265-1043108[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.6 2.7e+02 2.5 0.2 2 23 116 138 115 138 0.90 2 13 0.0013 0.093 13.4 1.3 2 23 147 169 146 169 0.94 3 13 1.9e-06 0.00014 22.2 2.1 2 23 183 205 182 205 0.96 4 13 0.0062 0.46 11.2 9.1 2 23 462 483 462 483 0.97 5 13 1.9e-06 0.00014 22.2 2.9 1 23 489 512 489 512 0.95 6 13 0.00014 0.01 16.4 0.7 1 23 517 540 517 540 0.96 7 13 0.0002 0.015 15.9 4.5 1 23 558 580 558 580 0.96 8 13 2.5e-05 0.0018 18.7 1.7 1 23 585 607 585 607 0.98 9 13 3.3e-05 0.0024 18.3 1.7 1 23 613 635 613 635 0.95 10 13 0.00033 0.024 15.2 0.7 1 23 641 663 641 663 0.98 11 13 3.4e-07 2.5e-05 24.6 2.7 3 23 671 691 670 691 0.99 12 13 2.3e-08 1.7e-06 28.3 1.0 1 23 697 719 697 719 0.99 13 13 1.5 1.1e+02 3.6 5.2 1 19 724 742 724 747 0.88
Sequence Information
- Coding Sequence
- atgcctgACACGGACACATACAGTCAGTTCGATGCGGAGCGCGTCTGCCGTGTCTGCCTGAGCGAAGTTGGCGATTTTTACTTCATCTACGATGAGGCACCCGTGGAACAGGGCGCCAACATCGCCCAAATACTTAATGAATGTACACGGTACACCTGCGAGCGCTTCGATAAGATGCCCCATCACATGTGCGACACGTGCATTAAGGCCGCTTGCCAGGCGTATCGCTTCAAGCGAGACGCCGAGAAGGCGTATCGTTCCCTGGTGGCTATTCTAGGCTGCACACCGTCCATAAAGCCCAACAGTAGCGATGTGTGCACCCAGACCGAACAGGTGCCAATGCTGCCTTGCGGCATTTGTGATGATAAGTTTCTCAATGTACTTGAGTTGCGTCTGCATCGACGGCGACAGCATAAGAATCTGGGCGTAATGGATCTCAAGTGCAAGCTATGTGATACGCAATTCACGGAGTATCGAGAATTGCGAAATCATCTCATGGAGAAGCACGATCAGCAATCTGGTTCATCTCTACTGCGTCGACGTGTGGAGTGTCGTCAATGCCAGCGTGTTTTCTCTCGGCGAGATCATCTGCTTCGTCACATGCAAACTGTTCACAAAGTGGACAAGATGGAGGCGCGTAAGCGACGCCAGAAGACGGAAAGAGAAGATATTCAGCCAGATGCCGATAGCACTTGGCTCATCGATGAGGCAACCATGCAGAGCGGCGACGGACTGGAGTCAACTGCGTTGCTACTCAATCCCAGTGCAGGTTCCGAGGATAGCAACAACGATAATATCGATTATCATACCAATCCCATATCAAGCAATGAGGAGGCAGACGACGATGAGGCTAAGAAATCCTTGTGGCTACACATTAAACCCGAGCCAGTTGCAGAAATCGAAGTGGAACCTGACCTGGAGCGTAGAACGAAGCCCAAACAGGACTTGGAGGAATTGGATGAAAAACGCAAAAACTCACTGGAAGCGGTGGTAAAGGTAGAGCCGATAGCCACAGAGCAGGGGGATCAGCCGTTAACCATTAAGCAAGAGCGACAGCGTGCTGataatgacgatgatgaggacGATGATGAGGAAGAGGGCGAGGGCGAGGATGATGAAGAAcaggaggaagaggaagacTTGGAAATGGATGCCAACACgcacagcacagatgaagaagaagatatagatgatgacgatgatgatgatggtgaggGTGAAGACGAGTTAGATCGCAAGTCTATGTCGACACACGCGCAACCTGGTCAAGTGGAAATAGTGCGAGAGTATTTGAAGAAACCCCTGGCCGGCAAGGATCAACAacgacgtcgtcgtcggcgtagtaacaagcaacaaaatgaTCCAGTATCGAATCCAGAGAATCGCTGTGACATCTGCCAGCGCACCTTCTCACGCCATTGCCATTTGTTGCGACACAAACTGTCGCACCTGGAGAAAAAGCCGCACAACTGTCCGCATTGCCCCAAGGCATTCGCACGCAGCGATCATCTCAAGGCGCACGTTCAGAGCCTGCACGGCACAAAGGAGCACAAGTGTCAGTTGTGCGATGCAGCATTCGCTCGTCTCGACGCCCTCGAACGCCACAAGATGAGCAAGCACAATGGAGAGGGTCTGGATGCCAGCAGCGATCTGAAGGTGCATATCAATGAGCACACGTGCGAGTATTGCGCCAAGCGTTTCTCAAGCAAAACCTATTTGCGGAAGCATAAACTGCTCCACACGGAGTTCCTCTATGCCTGCAAGAACTGCGACGAGACGTTCAAGGAACGCCAGCAGCTGCGTAACCACGAGAAGACCCACACGGGTCAGCGCAATTTCCTCTGCTGCATCTGTGGTGATAGCTTTGCGCGGAACGACTACCTGCGCGTCCACATGCGGCGCCACAATGGCGAAAAGCCGTACAAGTGTCGGTACTGCATCAAGGCATTTCCACGTGCCACAGATCTGAAGGTACACGAACGGTATCACACCAACACCAAGCCCAATCTATGCAATACCTGCGGCAAGAGTTTCCAtcgagcctacaatctgacgaTACACATGCGCACCCACACTGGCGAGCGACCGTACAAGTGTGATCAGTGCCCCAAGAGCTTTAGCCAGAGCAACGACCTCAAGGCGCACATCAGACGGCACACCGGCGAGCGCTACAAGTGTCCACATTGCGATGCGTACTTCCTGCAGCTGTATCACATGCGCAACCACTGCCTCAGTGCCCACAATATGCACATCGAGACGAAGACGGGGCGTTTGCAGCGGATTGGAATGCTGGATGAGAGTAATCACAGTCACTTGACCACGGTTGTTATGCCACCAGGGCAACGCTTTCAGGAGCAGGCTAccataacagcagcagcagcagcagctgccacagcgaCATCAGCAACAATTATGCATTCACCTGCGGCATATAATACATCCTCACCAGCGTCAGCAACGGGCTCTACGTCCGCATCAGCAACGGTTTCCGTTCCTGCACATCCGGATGGTAGTACTAGTTTTCAAGGCCCTCCAGCTGCAGGCACAGCGGCGCCGGCATTTGGGGCATTCAACATAACACCAGTAGTCATGGcccaattgaTGTACAATCACAGTGGCAATAGCCAACCAAGCAACGCCAGCGGCAGTGAGGCAGGCAAATAA
- Protein Sequence
- MPDTDTYSQFDAERVCRVCLSEVGDFYFIYDEAPVEQGANIAQILNECTRYTCERFDKMPHHMCDTCIKAACQAYRFKRDAEKAYRSLVAILGCTPSIKPNSSDVCTQTEQVPMLPCGICDDKFLNVLELRLHRRRQHKNLGVMDLKCKLCDTQFTEYRELRNHLMEKHDQQSGSSLLRRRVECRQCQRVFSRRDHLLRHMQTVHKVDKMEARKRRQKTEREDIQPDADSTWLIDEATMQSGDGLESTALLLNPSAGSEDSNNDNIDYHTNPISSNEEADDDEAKKSLWLHIKPEPVAEIEVEPDLERRTKPKQDLEELDEKRKNSLEAVVKVEPIATEQGDQPLTIKQERQRADNDDDEDDDEEEGEGEDDEEQEEEEDLEMDANTHSTDEEEDIDDDDDDDGEGEDELDRKSMSTHAQPGQVEIVREYLKKPLAGKDQQRRRRRRSNKQQNDPVSNPENRCDICQRTFSRHCHLLRHKLSHLEKKPHNCPHCPKAFARSDHLKAHVQSLHGTKEHKCQLCDAAFARLDALERHKMSKHNGEGLDASSDLKVHINEHTCEYCAKRFSSKTYLRKHKLLHTEFLYACKNCDETFKERQQLRNHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCIKAFPRATDLKVHERYHTNTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFSQSNDLKAHIRRHTGERYKCPHCDAYFLQLYHMRNHCLSAHNMHIETKTGRLQRIGMLDESNHSHLTTVVMPPGQRFQEQATITAAAAAAATATSATIMHSPAAYNTSSPASATGSTSASATVSVPAHPDGSTSFQGPPAAGTAAPAFGAFNITPVVMAQLMYNHSGNSQPSNASGSEAGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -