Basic Information

Insect: Liodrosophila aerea
Gene Symbol: -
Assembly: GCA_035045005.1
Location: JAWNNL010000520.1:232884-237479[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.00015 0.011 16.3 0.4 1 23 217 239 217 239 0.97

2 26 0.0034 0.25 12.0 2.2 1 23 245 267 245 267 0.97

3 26 0.042 3.1 8.6 0.2 2 20 299 317 298 320 0.91

4 26 0.028 2 9.1 2.6 1 23 395 418 395 418 0.90

5 26 0.12 8.9 7.1 1.0 2 22 428 448 427 448 0.96

6 26 3.5 2.5e+02 2.5 3.7 1 23 457 479 457 479 0.94

7 26 0.52 38 5.1 2.1 2 23 486 507 485 507 0.96

8 26 0.0023 0.17 12.5 0.5 1 23 583 606 583 606 0.93

9 26 0.15 11 6.8 0.1 1 21 615 635 615 636 0.90

10 26 0.064 4.7 8.0 3.0 1 23 645 668 645 668 0.95

11 26 0.00044 0.032 14.8 0.3 2 23 694 715 693 715 0.97

12 26 6.3e-05 0.0046 17.5 5.3 1 23 723 745 723 745 0.99

13 26 0.26 19 6.1 1.3 1 23 891 914 891 914 0.95

14 26 0.00055 0.04 14.5 3.6 1 22 921 942 921 942 0.96

15 26 0.13 9.2 7.1 2.3 1 23 951 974 951 974 0.95

16 26 1.1e-05 0.0008 19.9 1.9 1 23 1000 1022 1000 1022 0.97

17 26 0.00052 0.038 14.6 2.2 1 23 1029 1051 1029 1051 0.98

18 26 0.041 3 8.6 0.1 2 22 1078 1098 1077 1098 0.93

19 26 0.013 0.92 10.2 3.9 1 23 1143 1166 1143 1166 0.96

20 26 0.019 1.4 9.6 0.4 1 23 1203 1226 1203 1226 0.96

21 26 0.00097 0.071 13.7 3.5 1 23 1253 1276 1253 1276 0.97

22 26 1.4e-05 0.001 19.5 0.1 2 23 1304 1325 1303 1325 0.95

23 26 4.6e-05 0.0034 17.9 2.9 1 23 1331 1353 1331 1353 0.99

24 26 3.4e-06 0.00025 21.4 3.0 1 23 1359 1381 1359 1381 0.97

25 26 5.8e-08 4.3e-06 27.0 2.4 1 23 1387 1409 1387 1409 0.99

26 26 0.00024 0.018 15.6 0.4 1 23 1415 1437 1415 1437 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.00015	0.011	16.3	0.4	1	23	217	239	217	239	0.97
2	26	0.0034	0.25	12.0	2.2	1	23	245	267	245	267	0.97
3	26	0.042	3.1	8.6	0.2	2	20	299	317	298	320	0.91
4	26	0.028	2	9.1	2.6	1	23	395	418	395	418	0.90
5	26	0.12	8.9	7.1	1.0	2	22	428	448	427	448	0.96
6	26	3.5	2.5e+02	2.5	3.7	1	23	457	479	457	479	0.94
7	26	0.52	38	5.1	2.1	2	23	486	507	485	507	0.96
8	26	0.0023	0.17	12.5	0.5	1	23	583	606	583	606	0.93
9	26	0.15	11	6.8	0.1	1	21	615	635	615	636	0.90
10	26	0.064	4.7	8.0	3.0	1	23	645	668	645	668	0.95
11	26	0.00044	0.032	14.8	0.3	2	23	694	715	693	715	0.97
12	26	6.3e-05	0.0046	17.5	5.3	1	23	723	745	723	745	0.99
13	26	0.26	19	6.1	1.3	1	23	891	914	891	914	0.95
14	26	0.00055	0.04	14.5	3.6	1	22	921	942	921	942	0.96
15	26	0.13	9.2	7.1	2.3	1	23	951	974	951	974	0.95
16	26	1.1e-05	0.0008	19.9	1.9	1	23	1000	1022	1000	1022	0.97
17	26	0.00052	0.038	14.6	2.2	1	23	1029	1051	1029	1051	0.98
18	26	0.041	3	8.6	0.1	2	22	1078	1098	1077	1098	0.93
19	26	0.013	0.92	10.2	3.9	1	23	1143	1166	1143	1166	0.96
20	26	0.019	1.4	9.6	0.4	1	23	1203	1226	1203	1226	0.96
21	26	0.00097	0.071	13.7	3.5	1	23	1253	1276	1253	1276	0.97
22	26	1.4e-05	0.001	19.5	0.1	2	23	1304	1325	1303	1325	0.95
23	26	4.6e-05	0.0034	17.9	2.9	1	23	1331	1353	1331	1353	0.99
24	26	3.4e-06	0.00025	21.4	3.0	1	23	1359	1381	1359	1381	0.97
25	26	5.8e-08	4.3e-06	27.0	2.4	1	23	1387	1409	1387	1409	0.99
26	26	0.00024	0.018	15.6	0.4	1	23	1415	1437	1415	1437	0.97

Sequence Information

Coding Sequence: atgttgCCAGCCAACATATGCCGCACTTGTGCTCTGGAAGCAGATGACTTGGTAGTGTTGTCAACGAGCGCCGAGAAATACTCGAATAAAACATTAAGCGAAATGTTGCATGAACTAACGCAAAGTGATCCTCTGCTGGAACATACAGATGACCATTTGCCTCAGTATTTGTGCACTGAATGCCTGCGCAAGCTGCAGGATGCTTACGGCTTTGTGTTGCAGGTGCGTCAGGTGCACGAGCAAATGTTGCTAACGCTGCGCAAGGAATCGCAGGCAGTCCAATGTCTGGATGAGACCCCCATTGACATGCAGGACATTAAGATGGAATCAGACAAAGACTTGAATGTGACAACGGAGCACATTGTACCAATCACTGAAGGAGATTATACTGCGTATGCTCCCAATGTGTCTATGTTAAAACTGCAACCGGAAAGCGGCAGTGATAGCAGCCTGGCTGATACAGCTGATGATGACGCTGACTTTAAACCAGTTCAATTGAGGCGCAGTAAACGTCACAGCCAGGCTAAGGTTGCTACAGATAGTGAGAGTGAAGCCACCTCAGCGCATTTAAGTGCCTTGCCGTTAAAGCGTCGTCGCGGTCGTCCACCACTTATTGCAAAAGTGGAGTCATTAAACGAGGAGGGGCGTTATGCCTGCCCAGATTGTGGCAAAACATTTGCATGGCATCGGGACATGCAACGTCACGCTCGCATCCACTACGGCCAGGCTGCCCATGTGTGTGAAAGCTGCGGAAAGGGTTTTCTGCGCAAGGACAAGTATAAGAACCATTTACGCTGGCATGAGAGATGCCATGCCAAGAGCCAGGTGCTACATTCCAGTAAGGAATGGCGTTTTGCCGAGCGACTCTACAGCCCACGTAACTTTAGACGTCTGGAATGCAAGCTGTGCGATCTAGAGTTCCAGCGCATACAAGACCTGCGAGAGCATATGCCGAGCCATGCCAATGTTGAAACATTGTCGAATCTCAAGGCCTACAGCGATGTCGTTAAGGAGCAGTTTGCCGGCGAGCAACAGGACTTGACGCAAATCAGGCAACAGATATCGGCAGAAGTAGCCCAGGGTCGGCAGCAGCTAGATAAATATTGCCTTGTGGTCAATGCTCATGGCTATGAGATGTGTCTGAGTGATTCGGACGAGGATCCAGCTGACCAGGCTCCAGACTACCATTGTCTGCCATGCAACATGTCCTTCACACGCAAATATCGTCTGATGCGGCACACGATGGAGGAGCACGTGACGCAAAAGACTTCGGCGTGTCAGCGCTGCAACTTTTGTGGCATCGGTTTCGTATGCGCTAAGCAGCTGGAACAGCATCGCCGTACACAGTGCTACAGCCCATTCAAGCGCTACAGTTGCTCCAAGTGTCCTGGAAAGTTCACGTGGTTGGAAAATCTCCATCAACATGCCTGCTTCCACTCGAACAGGCGTCGTATTGAATGCTGCCTCTGCGATGCACAGCTGAAAAGTATGTCCGCTCTGAGGTTGCACTTATGTAGTCATGCTGATGGTACAAGTGGCATCGATCCTGCGCAAAGATCAAGCTACTTCTGCAGCTATTATCCCTCTGGCCTCGACTGTAGTGTGGAGGAACTTAGCCAACGCATTGCAACAGATTTTGAAGCGCAGGACTATGGGTGTTTCTTCAATGCGTGCACCAGCAGTGGTCAAGAATTAGACTTCAACGCTTCGGATACAGATGAAAGCGCTGGGGAACCTTTGCCTAAACATGCATGTGCCGTCTGTGGAGAAACTACAAAGCGTCTGGCCCAGCTACTCCAGCACCAGAAGGACCAACACAGTCAACTGCAGGCAACTCTACCACATGTCTGCGACAAGTGTGGTCAGGGCTTTGTGGCCGTGCCTCTGCTCCAACAGCATCGTTCTCGGCTCTGTGCCAAGCAACATGCGAAGTATCATTGTGAGGAATgcaatttacatttcatttggctttCCAACTACGAGCGACACATGACACTGAGGCATGAACAGGCACTGGAGTCGGATCAGAAGTTAAGCAATAGATTACGCAGCAATCGCTCACAAGCTGCTGCCCAACTGCAGTGCAACGAGTGTGGGAAGTTGTTCATTTGGCCAAAGGATCTGACACGTCACAAACGCATCCATCAGCCAACGTCCACTGCCAAGTATGAATGCACGCACTGTGAGCGCAAGTTTCACCGCAAGGATGGGCTGAAGTCACACCTGCGTGTGCACGGCGAACAGCACCAGCAGTCTCCAGATGTAGCGTCTCCTGCAGCAGATGCGAAGCCGATTCCGACGCTGTTGCAGCAATTGTGCCGTCCAAATGGCTGCAAACAAATCCAGTGTATGATATGTCTCTcgcagcatacaaagatctcgGATCTGCGCATGCATCTGGAGACGCATCAGCTCGAAGTTCAGTTCCTGGAGGCGCGTGGGGAACCAGAGAGCATTGCCAACATTTGTCGTAACCTGTATCCCGAAATGGAGCCAACTGGCCTCCAGAAGCAGCAGTTAATTGAACGCATACAGTCCGATGTCTCCAAAGGAGTCGAGCTGGATAGATTCACATCAATAACCAATGAAGCTGGCATTGAGCTGAGCCTAAATAGTAGCGAAACGGACACGGATTCGGATTCAGctgaaacaacaaaagccagtAAAGTTTATTCCTGTGATCTCTGCCAGATGCAGTTGCCGCGCAAGCATCGACTTTATGCCCACCAATTGGAACAGCACGCCCACCAACAGACGAATCACAGCTGTACCCACTGTCAACTGAGTTTTGTGAATAAGGAACTGTTGGAGCATCATTATCGCACGCTCTGCCGGAACCTCCAGAAGCGATTTCACTGTCGCAAGTGTCCATTTCGTTTTCGCTGGCGGGAGAATCTCAAACTGCACACTGAAGTGGCCCATTATGATGCTTTAGCTCGTGAACAGCCCCAAGAGGGCAATCAGTCGGATGATAAACGTCTGCAGCCAGTGTTTAGTTATGACTGCACCGAGTGCAATCGGAGtttcaaaatgcaaaaggaTCTCACGCGGCACACCCTGATGCACGCTCAGGAGTCGAGCATCTTCCGCTGCTCCTGGTGTGCACGACGCTTCTATCGGCACGCCAATCTATTGCAGCATATTGAGCGCCATGGCATCACAGCGGCTCAACTGCCTTATGCCGTGAGCCTGCTCAATGCCAGTCGGCATCCGCACGGACGGAAGTGTATTGAGTGCAAGGTGTGCAGTTTGAACTTTGCATCAATAACCTCACTACGATCTCATCTGCTGACGGCTCCTAGTGGCACACACCATGAGATAGATTCGATGCAAAACTATTCCATAACCAATCACTTGGGCTATGAGCTGCACCTGGACGACTCGGAAACGGATGAGGAAGCTAAGGCACCAGGTGTACCTGGTCATTATACTTGTGGCATGTGCCAACTGCGTTGTGTGCGCAAGTATGAGCTgcaccagcatcagcaggCCATGCATCGGCTGGAGAGGATCAAAGATGGCTGCGGTCAATGCATCTTTAAGAGCGTCTCGCCGGATCTCATTGCCTATCATCAGCGGATGCAGTGCGGCAACGTGGAGAAGCAATTCAAGTGCGTTCAGTGTGGCTACAAATTCATGTGGGAATCGAATCTCCTGCTGCACATTCAACTACAGCATGCCAACAAGGAGGAACAGCCAAAAACAGACCAAACCCAGACAACGGACGCAGTTGCAACCAGCACTGAGTCAGCGGTATTTCAGTGCGGTCAATGCCCACGTAAGTACAATCGCAAGGATCGTCTGACGGCACATGTGAAGAAGTGTCATACACctggcgctgctgcagttgccaccAAGAAGTCAGACGCAATGCCTGCATCCAGTACTGGCAAGCAACAGAAGAGCTTTCTATGCGCGTTTTGTGGCAAAGCGGTAAGCTCCTCCTCCAATCTGATCATACATATTCGTCGCCACACGGGCGAGAAGCCCTTCAAGTGCGACTATTGTGACATGGCCTTTCCGCGCTCCTCCGATCTGCAGTGCCATCGGCGCACGCACACCGGTGAACGTCCACACATCTGCACAGTTTGCCAGAAGCGATTTGCCCGCTCCTataagctgcagcagcacatgCGCATCCATAATGGCGAACGGCCCTACAAGTGCACCTACTGCGACAAGAGCTTCACACAGTCCAACGATTTGACCCTACACATTCGAAGGCACACGGGAGAGCGACCCTATCAATGTGACACATGCGGCGAGAGATTCATCCAGGGCACAGCCCTCAAGAACCATCGACTCCAGCATGGACACTACGAGGCGGCAGCAGGTCAATCGCAGAATAAATGA
Protein Sequence: MLPANICRTCALEADDLVVLSTSAEKYSNKTLSEMLHELTQSDPLLEHTDDHLPQYLCTECLRKLQDAYGFVLQVRQVHEQMLLTLRKESQAVQCLDETPIDMQDIKMESDKDLNVTTEHIVPITEGDYTAYAPNVSMLKLQPESGSDSSLADTADDDADFKPVQLRRSKRHSQAKVATDSESEATSAHLSALPLKRRRGRPPLIAKVESLNEEGRYACPDCGKTFAWHRDMQRHARIHYGQAAHVCESCGKGFLRKDKYKNHLRWHERCHAKSQVLHSSKEWRFAERLYSPRNFRRLECKLCDLEFQRIQDLREHMPSHANVETLSNLKAYSDVVKEQFAGEQQDLTQIRQQISAEVAQGRQQLDKYCLVVNAHGYEMCLSDSDEDPADQAPDYHCLPCNMSFTRKYRLMRHTMEEHVTQKTSACQRCNFCGIGFVCAKQLEQHRRTQCYSPFKRYSCSKCPGKFTWLENLHQHACFHSNRRRIECCLCDAQLKSMSALRLHLCSHADGTSGIDPAQRSSYFCSYYPSGLDCSVEELSQRIATDFEAQDYGCFFNACTSSGQELDFNASDTDESAGEPLPKHACAVCGETTKRLAQLLQHQKDQHSQLQATLPHVCDKCGQGFVAVPLLQQHRSRLCAKQHAKYHCEECNLHFIWLSNYERHMTLRHEQALESDQKLSNRLRSNRSQAAAQLQCNECGKLFIWPKDLTRHKRIHQPTSTAKYECTHCERKFHRKDGLKSHLRVHGEQHQQSPDVASPAADAKPIPTLLQQLCRPNGCKQIQCMICLSQHTKISDLRMHLETHQLEVQFLEARGEPESIANICRNLYPEMEPTGLQKQQLIERIQSDVSKGVELDRFTSITNEAGIELSLNSSETDTDSDSAETTKASKVYSCDLCQMQLPRKHRLYAHQLEQHAHQQTNHSCTHCQLSFVNKELLEHHYRTLCRNLQKRFHCRKCPFRFRWRENLKLHTEVAHYDALAREQPQEGNQSDDKRLQPVFSYDCTECNRSFKMQKDLTRHTLMHAQESSIFRCSWCARRFYRHANLLQHIERHGITAAQLPYAVSLLNASRHPHGRKCIECKVCSLNFASITSLRSHLLTAPSGTHHEIDSMQNYSITNHLGYELHLDDSETDEEAKAPGVPGHYTCGMCQLRCVRKYELHQHQQAMHRLERIKDGCGQCIFKSVSPDLIAYHQRMQCGNVEKQFKCVQCGYKFMWESNLLLHIQLQHANKEEQPKTDQTQTTDAVATSTESAVFQCGQCPRKYNRKDRLTAHVKKCHTPGAAAVATKKSDAMPASSTGKQQKSFLCAFCGKAVSSSSNLIIHIRRHTGEKPFKCDYCDMAFPRSSDLQCHRRTHTGERPHICTVCQKRFARSYKLQQHMRIHNGERPYKCTYCDKSFTQSNDLTLHIRRHTGERPYQCDTCGERFIQGTALKNHRLQHGHYEAAAGQSQNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -