Laer016691.1
Basic Information
- Insect
- Liodrosophila aerea
- Gene Symbol
- retn
- Assembly
- GCA_035045005.1
- Location
- JAWNNL010001395.1:843431-863482[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6e-26 1e-22 80.4 0.0 2 89 314 399 313 399 0.96 2 2 1.1 2.3e+03 -0.8 0.2 9 38 544 579 496 597 0.59
Sequence Information
- Coding Sequence
- ATGTTGCCAGTGAAGCGTCCATCTCCATCGTCTTCGCCTCAGTGTGTGCTCtCTCATGGAGATCCTGCGGATGATGAGATGCGTGATTGCGATTCCGTGGACGGcgaacatcatcatcatctgagCAGCGCCAAGGCAGCGATTGCAGCTCGTCTCAGTCACTCGGTAGCCGGCGGTGTGGCCCTCAACTTTGCCAGTCCGGAGCAGCAAATAGATCTGCCACTCAGccatcatcatcagctgccGTCAAATCATCCGCTGAATGCTCTTGGTAGCTTCATGAGCATCGGTGCACTACACAGCATTCCAAATCTGCAGCACAGCGATGTGCTGGAGAAGCTTAAGATGCAGGTACGAGACATGAAAGTAGGTCTCATGGAACAGGACTATGCAGTGGCGGCACATGCGGCTGCATTCGGTGCGAATATGCTGCCCACCACAATGAGTTCGGCCTTTCCGCTGCCCCACAATacggtggcagcagcagcagcggcagctgccaCATTTGGCACACCAGTGCCCTTGCCTAGTAATGGCGCCAGTTACAAtggtgcaacagcagcagcaacaggaggaggtggaggaggaggcggaggaggagctggttcaggagcaacagctgctgctgtcaataATGGAACAGTTGGAGGAGCAGGTGCCACAGGAGTTGGCGGTGCTGCTGCCGGTGGAGCAGGAACAGGAACgggtggaggagggggaggaggaggagcatcagcagctggcaatagcagcagcagtaataacGGACATCCCTTCTCCTTTGCCTCACCAACAGCGCCAAGCGCCAAAGAAGCTAATTCCGCGTCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCAATGCAGAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTATGAAATTAATGATGATCCGAAGCGCAAGGAGTTCCTCGACGATTTGTTCTCATTTATGCAAAAGCGCGGCACGCCCATCAATCGGCTGCCCATAATGGCTAAATCGGTGCTGGATCTGTATGAGCTATATAATTTGGTTATAGCACGCGGCGGCCTGGTCGATGTGATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTGCATCTGCCCTCCAGCATAACCAGTGCTGCCTTCACGCTGCGCACTCAATACATGAAGTATCTGTATCCATACGAATGCGAGAAGAAGAACCTAAGCACGCCGGCCGAGCTGCAGGCGGCCATCGATGGGAATCGACGTGAAGGACGACGCTCCAGCTATGGCCAATACGAGGGCATTCATGGTCAAATGCCGCTGACGCCTATTTCACGTCCCTCTCTGCCCGCTGGCATGCAACAAATGTCGCCGTTGGCCTTGGTTACACACGCCGCAGCCGCCAATAATCAGCAGGCGCaggcagcggctgcagcagcggtGGCACATCGACGCCTGATAGGTGGCCCGTCATTTGGCCAGATGCCGAATCTGGTCACACAGGAGATTGAGAATCGCATGATGGAGTATCTGCAGCTCATACAGGCCAAGAAGGAGCAGGGCACACCAGTGCATccgcatcagcagcaacaccaacagcagcagcagcagcaacaatcgctgcatctgcatcagcaacagcagcagcaccaacagcagcagcagcgtcagcgCTCACAGAGTCCCGAGCTGAGCACACGGGAGGCGTTGAGCGCGCAGGTGGCGCTGTGGCATATGTACCACAACAGCAGTCCAACCGGCTCGGCGCACACCTCACCACAGCAGCGTGAAGCCCTGAACCTTTCGGAATCGCCGCCAAACGTAACCTTAAACCACATTAAACGGGAACGCGAACGTGATCCCTCACCAGAGCCGGTGGATCGTGAGGATTCACCATCTCAACCGCCGCCAACCAAGCGTGCGGGCAGCGCCCTAATGCCACCGGGTTTTCCTGCTAATTTCTACTTAAATCCACACAATATGGCAGCGGTGGCCGCCGCTGCTGGCTTCCATCACCAAGCGAACAGCAGtgcgcatcatcatcatttacatcagcagcagcatgatgCCGCCTCTGAGGGTGAACCGGATGAGGATTATGGCAATGCACAGCACAATACCACCATGTCGTCCATGCAAGATGACAacgagccacagcagctaaaTGGACACCACCACCATCTGCATGATCCTCACAGTGAGCATGACTCTCAGcttcaccatcatcatcagaaTCATTTGGACAAATCGGATGATTCAGCCATTGAGAACTCACCCAGCACATCCACCTCGGCATCAGCGTCTGGCGGCCATCGTCACAGTTCACCCGTGTCCACCAAGAAGAAGAGCTGCAGTGGCACTGGCAAGGCACAGGGCAGCTCCAAGGatacacaacacaacaacacaacaattgGGGGGGAAGCAAGTGTCAAGCTGAATCCCCTCGAGACACTCAGCCTGCTCAGCGGCATGCAATTCCAAGTGGCACGCAATGGCACTGGAGCAAATGGCGAACAGCAGTTGATGGTCAATCTGGAGCTGAATGGCATCAAGTACTCGGGCATGCTGGTGGCCAATGCcaaacagccacagccagagcagcTTAAGACAACTACTCCAGCCGTCAGTCTAGAGAATCTAACGAAGGAGCCGAGACAGTCTGAGGACCAGATGGAACTGCAGGATGACGTGAAGGAGGAGCgtgaggatgaggaggaggagaagcagcagcaggaggcagTGAAGCAAGAGCATTGTCAAGCTGCCAGCCAGAATGAGGCAAAGCCAGAGCGGAGCGCACCATTGCGTCCAAACGAAgacgaggatgaggaggaggacgaGGAGGATATTGTAAATGGATCGAATGCCAGCAGCCTGGGGGGCGTGGCTCCTcctggcagtggcaatggccCGGTGGGCGTAACAATGCTTAAAGATGCTGTGGTCAGCTCGTAA
- Protein Sequence
- MLPVKRPSPSSSPQCVLSHGDPADDEMRDCDSVDGEHHHHLSSAKAAIAARLSHSVAGGVALNFASPEQQIDLPLSHHHQLPSNHPLNALGSFMSIGALHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAVAAHAAAFGANMLPTTMSSAFPLPHNTVAAAAAAAATFGTPVPLPSNGASYNGATAAATGGGGGGGGGGAGSGATAAAVNNGTVGGAGATGVGGAAAGGAGTGTGGGGGGGGASAAGNSSSSNNGHPFSFASPTAPSAKEANSASNSSTSSEASNSSMQNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEGIHGQMPLTPISRPSLPAGMQQMSPLALVTHAAAANNQQAQAAAAAAVAHRRLIGGPSFGQMPNLVTQEIENRMMEYLQLIQAKKEQGTPVHPHQQQHQQQQQQQQSLHLHQQQQQHQQQQQRQRSQSPELSTREALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSESPPNVTLNHIKRERERDPSPEPVDREDSPSQPPPTKRAGSALMPPGFPANFYLNPHNMAAVAAAAGFHHQANSSAHHHHLHQQQHDAASEGEPDEDYGNAQHNTTMSSMQDDNEPQQLNGHHHHLHDPHSEHDSQLHHHHQNHLDKSDDSAIENSPSTSTSASASGGHRHSSPVSTKKKSCSGTGKAQGSSKDTQHNNTTIGGEASVKLNPLETLSLLSGMQFQVARNGTGANGEQQLMVNLELNGIKYSGMLVANAKQPQPEQLKTTTPAVSLENLTKEPRQSEDQMELQDDVKEEREDEEEEKQQQEAVKQEHCQAASQNEAKPERSAPLRPNEDEDEEEDEEDIVNGSNASSLGGVAPPGSGNGPVGVTMLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -