Basic Information

Insect: Linnaemya vulpina
Gene Symbol: -
Assembly: GCA_963675445.1
Location: OY776279.1:82376593-82380770[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.14 16 7.4 4.3 2 21 476 495 476 498 0.90

2 9 0.051 6.1 8.7 6.3 1 23 505 528 505 528 0.93

3 9 0.13 16 7.4 4.8 1 23 533 556 533 556 0.89

4 9 0.00022 0.026 16.2 0.8 1 23 566 588 566 588 0.99

5 9 9.9e-05 0.012 17.3 3.3 1 23 593 615 593 615 0.98

6 9 7.2e-07 8.6e-05 24.0 0.2 1 23 621 643 621 643 0.98

7 9 0.00043 0.051 15.3 1.0 2 23 649 670 648 670 0.97

8 9 0.13 15 7.5 0.4 1 23 710 733 710 733 0.84

9 9 0.00062 0.073 14.8 1.3 2 23 740 762 739 762 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.14	16	7.4	4.3	2	21	476	495	476	498	0.90
2	9	0.051	6.1	8.7	6.3	1	23	505	528	505	528	0.93
3	9	0.13	16	7.4	4.8	1	23	533	556	533	556	0.89
4	9	0.00022	0.026	16.2	0.8	1	23	566	588	566	588	0.99
5	9	9.9e-05	0.012	17.3	3.3	1	23	593	615	593	615	0.98
6	9	7.2e-07	8.6e-05	24.0	0.2	1	23	621	643	621	643	0.98
7	9	0.00043	0.051	15.3	1.0	2	23	649	670	648	670	0.97
8	9	0.13	15	7.5	0.4	1	23	710	733	710	733	0.84
9	9	0.00062	0.073	14.8	1.3	2	23	740	762	739	762	0.96

Sequence Information

Coding Sequence: aTGCGTGTGTGCTCATTCTGCAAAAAAACATATGATGTTGGCGGCGGTGGAAATTTGTTTGGTGTTCCAAAAGATCCAGTAAGAAGAGCAAGGTGGAGTGAAATTTGTGGTAAATGGTTCAAACCCACCAGTTTGCTGTGCTCTGACCACTTTTTGCCTACCAGTATTGCCACGGCTGGAAAAAGATTGGTTCTTTTGCACAATGCCGAGCCTCAAGTAAGCGATATggagaaaaatgaaattttggctAATACGTTAACCACAGAagAATATAGAAACCCTGCCGCACCCAAAGATTCAACATACACGAATAATGTATTTGGAGAACAAAAAacagaatttaaacaaaattcaacTTCACATAATGCTATACCTCCACAACTGCAAGAAGAACCTATAGTGAGCATACCTCAAGAAGAACCTATGATGCAGATAACAGTTATAAAATCAGTTTCCTGTGCTGAAACCACCCAAACAAATACCCGCCTTTGTGGTTTAGTAGAAACTTCGGACTTAGTGGatgaatttcgttttaattgttTCTATTGTTCCGAAGTATTTCTATTGGAAAAATGGAGAGTATTCGTAAATCATTTGAAAGTTAAACATTTCGAATTAGAAGAAGCATTTAAAACATCTAAATACATTTCCGAAGATCACGATTACACTCCGGTAAACCTAACGCCGTCTATACCACCAGAGACTGCTCTTGAAACAGTTGTCTATAATGCCAAATCATTTCTAGTAGACCCACTGGAACCTACACACAACCCAATTGGGTCTGtggatttaaattcaatttattattcgCCAGATAGCAATAAGACAATTTCCAGCACTAAACAGCCTGTAACTAACTACACTAAAAGTAATATATCACCAAGTACAATGCCAACTTCTAtgattagaaatagattaagGAGAcgcaagcaaaaattaaaatattcattttcaaGAAGTTCTCAAGGAGTTTCGAGACCATTAAAGGTCACACCCTTAAGTCGTTGCCTTAAAAGAACAAATGATATAGAAGAAGATATGGGTTTTGACATAATGGAAGATTATGAAACAAACTATATTGCAAATGTTAACCAAAAACCCACAGAGATTACTTTTGGATATACACCAACTGACATTGTGAATACGCTGCTGGACAATATGAAACAATATCCGGTTTTGTGGCAGTACGACGATGAACCATTCAATCAAGACTATTACGAAGCTGTAGAAGATTTGTGTAAAATTGTTAATGACAAATGGTCCTTGAATATTGACAACTTGAAAATGCGACGAAGTATAAATCGTATTCTAAGATATTACTGTTATTTATATCCAAATACAAATGTTGAAAATGTTGACCAATTCACTTGTTATTACGATAAATGTGATACTTTTTTACCACCTGCGCATGAAATCGCTTATGCACGCTGTTCCCACTGttatacatgttttaaaaatgatttcgatTTGAAACTGCATCTTGGAGATGAGCATAACTATTTGCAATGGCCTTATAAATGTCCACAATGCAAAGAATGTTTTAGAGAATGTGACGAATTTGAGTTGCACAAACATCTGCCACATTATGATGAAGTCTTTAGGTGTCAACCATGCAACAAATCGTTTTTTCGTCTTCATAGTTACAAAAGGCATAATTTAGAAACTCATTCAAACAGTAGTAATAAAACTGGCGAGTTCAAATGTGATTTATGTGACAGAGTAGTTCAAACTATGAGTGGTTTAAGGAACCATAAAAGGACTCATGGTGAAAAACAATATAACTGCAATCAGTGCTCCAAATCATTCTTTGAGAACTCGAAGTTAAAACTTCATTTAAAGACTCATCAAAAACAGTATGATTTTATATGTGAAATCTGTGGAAAGGAATTTATTGTTCAATCTGGACTCAGGACACACATGAAGAAGCACACTGGTGAAAAGGTTACGTGTACTATATGCAatctaaaattaagaaaatcaagTCTAAGTCGGCACATGCGAACTGTTCATGTGGTACATGAAGGGATTGTTGAAACAACTGTAAAAGGGAAACATCTTTATTACAGGAGATTAATTAGACCAGGCTTATTGCGACGTAACCAAAGAAACCGTGCGGAAAAAAGGCAGTACCGGTGTAAAATTTGTAAGATTGGCTTTGATAACTACAAATTAATCGTAGAACACAACAAAGAGTTACACTATGATATGACGAAGTGGCCATGCAAAATTTGCAGTTCACAGTTTAGTCAAAAATTAAACCTAAAAGTCCATTATCGAAGGAAACATAAATTACATGTGTACCAAGTTTTCAAATTGGTCGaagaaaatattgatttaaatgaaGTGTTAGCTATTAAAACGGAGCATATTGATAAACTATTCGGAGCACTTACTTGTTCAAAAAACAACCCAGATAACATTGAAAAATCTAATGTTGCAACAAAAATTGAATCGGATCCTCTGCTGGATGAGATTTATTTCGATGAAGATGAAAACGAAGACATATATAATTCCACAATAGAAGATGAATTAATAGAAAGAGTTGATGACATGGATGTTGAAGACGATGTGATTGATGATATGTTTACCGATTTCTGA
Protein Sequence: MRVCSFCKKTYDVGGGGNLFGVPKDPVRRARWSEICGKWFKPTSLLCSDHFLPTSIATAGKRLVLLHNAEPQVSDMEKNEILANTLTTEEYRNPAAPKDSTYTNNVFGEQKTEFKQNSTSHNAIPPQLQEEPIVSIPQEEPMMQITVIKSVSCAETTQTNTRLCGLVETSDLVDEFRFNCFYCSEVFLLEKWRVFVNHLKVKHFELEEAFKTSKYISEDHDYTPVNLTPSIPPETALETVVYNAKSFLVDPLEPTHNPIGSVDLNSIYYSPDSNKTISSTKQPVTNYTKSNISPSTMPTSMIRNRLRRRKQKLKYSFSRSSQGVSRPLKVTPLSRCLKRTNDIEEDMGFDIMEDYETNYIANVNQKPTEITFGYTPTDIVNTLLDNMKQYPVLWQYDDEPFNQDYYEAVEDLCKIVNDKWSLNIDNLKMRRSINRILRYYCYLYPNTNVENVDQFTCYYDKCDTFLPPAHEIAYARCSHCYTCFKNDFDLKLHLGDEHNYLQWPYKCPQCKECFRECDEFELHKHLPHYDEVFRCQPCNKSFFRLHSYKRHNLETHSNSSNKTGEFKCDLCDRVVQTMSGLRNHKRTHGEKQYNCNQCSKSFFENSKLKLHLKTHQKQYDFICEICGKEFIVQSGLRTHMKKHTGEKVTCTICNLKLRKSSLSRHMRTVHVVHEGIVETTVKGKHLYYRRLIRPGLLRRNQRNRAEKRQYRCKICKIGFDNYKLIVEHNKELHYDMTKWPCKICSSQFSQKLNLKVHYRRKHKLHVYQVFKLVEENIDLNEVLAIKTEHIDKLFGALTCSKNNPDNIEKSNVATKIESDPLLDEIYFDEDENEDIYNSTIEDELIERVDDMDVEDDVIDDMFTDF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -