Lvul022998.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Linnaemya vulpina
Gene Symbol
-
Assembly
GCA_963675445.1
Location
OY776279.1:9202792-9207555[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.84 99 4.9 0.5 1 23 492 517 492 517 0.92
2 16 0.0034 0.4 12.5 1.5 2 19 529 546 528 548 0.95
3 16 0.18 21 7.0 0.7 5 23 622 640 619 640 0.93
4 16 0.00019 0.022 16.4 1.4 1 23 647 670 647 670 0.97
5 16 0.035 4.1 9.3 4.9 2 21 678 697 677 699 0.94
6 16 0.43 51 5.8 0.1 1 20 708 727 708 729 0.76
7 16 0.1 12 7.8 2.0 1 22 749 770 749 773 0.91
8 16 0.083 9.9 8.1 3.4 1 23 778 800 778 800 0.94
9 16 0.25 30 6.6 0.2 1 23 816 841 816 841 0.97
10 16 0.2 24 6.9 1.5 1 23 853 876 853 876 0.95
11 16 0.0035 0.41 12.4 2.4 2 23 882 904 881 904 0.93
12 16 0.00013 0.016 16.9 0.9 2 23 908 930 907 930 0.95
13 16 1.9 2.3e+02 3.8 5.7 1 23 936 959 936 959 0.94
14 16 0.00022 0.026 16.2 0.4 1 23 964 986 964 986 0.98
15 16 5.5e-06 0.00065 21.2 2.1 1 23 992 1014 992 1014 0.99
16 16 0.11 13 7.7 1.2 5 23 1030 1049 1020 1049 0.87

Sequence Information

Coding Sequence
aTGGCGGTTAATGTTTCCACACCTAGCAGTGTCTGTCTATATTGCAAAACAAGCTCGATTGCAGATGCCGAAAAACAATTTCACGAAATTTATGATGAAGTGGGACTGGAATTACAGCTTCCAACGTTGTTGGAgacattttttcatattaaagctACAAATGATGGAGAAAGTGTTCTTTGCGATGATTGCCTTAATCGGCTTATCGATTTGTATGATATAGCAGAGCATGCCAAAGAAGAGCAGGTTAAGACACCCGATGTGGAAAGTTCCAAAAGCAAgaatgtttcaaataatttgaaaaaagcaGGTGCAAATGAATCTGCCGTGCTAGCAGCAACAAAGATGGAACGTATAAATAAAGTACATACTGGTATATGTACAAAAGATGAATGTGGCCAGTTAAAGGAAGACGTTCTTGGTCAATCCGTTccaaataattccaaaattttttctcaaaacatAAATACCATTGAACAAAAAGGTTTGAAAATGTTTGCCTTAAGTTCCaacgttaatattaaaaatattaaacaaagtgAAGAGAGAAATATAGATAACCTTGAGTATGAAAGTATGGAAGATGTAATTGATAATTACAAAACTAAGCATTTTGATTTAGCACAAATTCAAACTGACAATGATATTGTTGAAAATTTCTCAGAGGAAGAGTTcatatttgtacataaaagtGATGAGTCGCAAGATTCAAATATCATAATAGAAGTTAGAAATCCAGAAGAGGCAGAAAGCAACGAACACATTGAGTATATTGAGGATTATGAAGTCGAAGGAATGGAAATAGAAGATGTTCTTAGCACGGACTCGTCAAATGGGTCTGAGGAATTAGATATAACAAGACATAATCGAGCGGAAACTTGTGCGAGCGATAGTCAAAATGATTTTGAGGAAAATAATACGTTCGAAGCCGACTTAACTGAGAATATAATTCATAATTCTGAAACTGTAAATGAACAAGAAGTGGATATGGAAAGCATTTATATAGAGGAATCTGAagatatattttgtgaaaacgATTCAAAGATGACTGAAGAAATTGATTGCGTAAATGAAACAcacaacaaaatagaaaaaataaaagaactaaaTTCATctgaaatagaaattaaaaataaccggGACACGGTTACTGTATCGATCAAGTGTGATGAAAACGATACTAAATCTTATAACGTGGAAAATAGTAACAATGGAGAAATTATTACAGTAAGCCACGTTGAGGGGTATAATGAATTTTGTTTAGAAGAGGAATATTTAATAGAAGaaataaCATGTTCCGAGGAATATGATGATATTGATTTAACCGATTATTTGGACAAAGTTTTAGTAACTAAATTTCATGATTTACAGCTTAAGTGGGAAAAGGAATGTAAAttATGTCGTCATACGCACAGTACCTTtgaagatttcataaatcatcCTTGCATAATTGATTTCGAAGAGGAGGAAGAGTTCTGCTGTACTATTAAAGATtgtgatgaaaatataaataatctaAATGCATTTGCAAGACATataatacttacacattatgagcaATTAGAAAGTGTATCAATTTATGGTAAATGTCCAGATTgtcaaaaaacattttcaagcattatagattttaataaacattcttGCTGTCGAAACATTAAAAGGAAATCTGGTTCACCAAATTATTGCCAATACTGCGATATGGATTTCCAATCCCTGAAAAGATATGTTTTTCACATGCAATTTCATTTAACAAATCGTCGGCCAAAGATTTGCTTATTGTGcggtgatttatttcaaaattccaatGATTTCTTTGAGCATACTCAATATAAACATATACCTGAAAACTCTATGGCTTGCATAAAgTGCGATCGCTTCTTTAAGAAAGAGGAAGTGTTTAAAAATCATATGGAATTGCATGAGGACTCCAAATATCAATATAGTTGCACTCTTTGTCCCAAAAAGTATACTAATAAATTCGGTTTGAATCAACATGTGGATACCTATCACAATAATAAATCCAATGCTTTGCGTTGTGGTCATTGCGAAAAAGAGTTTGTGAATAAACTATCGTATCGAAATCACATGAAATGTCATGGAACTGATGTGCAAGTGGAATCATTTATCTGCTCTACTTGTGGCATCATAAGTAATAACTCGGAATTCATTAAGCATCATATTGAATCAGATGAAGATTCGGCGTGTTTTTCATCGTCTATAGAAGAAGCCACTTTAGGATTTGGTTACACATGCGAAAATTGCTCTTTTGATTTCCATACAATTCAACAACTGAAAGCACACCGCTTAAGCGATACTCATAGCGACGAATTGTTCTATTGTGGTATATGCCGACAAAGTTTTAAAAGCCTACTTCACATGCGAAACCATTCCAGTAATCATAAGGATTTTAAGGAATGGCAGCAGTCATTTCCAATAACACGCTTTTTCGTTTGCAACATAGGTgATTGTCAAGAGTTCTATCCAATATGGACCACATTATATTACCACAAAAGACGCCCACATAAAACGCCAGAATCTTCTATATCACCTAGCAAGTTTGAATGTCAATTTTGCCAACAGTTGTGCACTTCAAAAATGTCTTTAGCTGTGCATGTCGCAAGAAGCCATAATAACTcaAATATTAAATGTCCTCACTGCAAGCGAGGCTTAAAATCCCAAGAGCTCTTGCAACAGCATATTGATCATTATCATACAAAAGTAGAATGTGAGATTTgctttaagaaattcaaaaatcgCCGAAACTTAGAATCGCACAATAACATGGTACATCTTAGTATTAAGCGctatttttgtaaacattgcGAGAAAGGATACTTTCATAAAAGTGAAAGGGATTTACacgaaaaaaaaGTTCACCCTAAAGTTGCTTTTAAGTGTGAAATATGCAATTTTACAACCAACTATCCGGAATCGTTGGAAATTCATATGGACAAACATAATAATCAGCTAAAATTTCAGTGTAAATTATGTGGAAAAGAGTTTGGTCGGAAACAACTTCTGAAAAGTCACTTAAAAAGGCATCGCGATAAAGATGATTACCACTGCGCAAATTATCTAAAAGAAAAGGGTTGTGATGCAAGTTTTATGTCGTGCGCTCTATTGAAAAGGCATATTGAAAATACACATCCTAATTCAAGTCATAACTTTAATGTGGAAACGGACGGCCAGAGTAGTTGTAATACTTCTAAGAAATGTTCTGAAGCCAATTTAATAgataatatttcatatgaaatattacAAATCAACGATGACAGTACGACCGAAAAACCCCATTTAAATTATACAGAATTTGATCGAAATGACATTGAATTAGTGTTGGAAAATGATGTGGAGTTTTATGTGCAGTAA
Protein Sequence
MAVNVSTPSSVCLYCKTSSIADAEKQFHEIYDEVGLELQLPTLLETFFHIKATNDGESVLCDDCLNRLIDLYDIAEHAKEEQVKTPDVESSKSKNVSNNLKKAGANESAVLAATKMERINKVHTGICTKDECGQLKEDVLGQSVPNNSKIFSQNINTIEQKGLKMFALSSNVNIKNIKQSEERNIDNLEYESMEDVIDNYKTKHFDLAQIQTDNDIVENFSEEEFIFVHKSDESQDSNIIIEVRNPEEAESNEHIEYIEDYEVEGMEIEDVLSTDSSNGSEELDITRHNRAETCASDSQNDFEENNTFEADLTENIIHNSETVNEQEVDMESIYIEESEDIFCENDSKMTEEIDCVNETHNKIEKIKELNSSEIEIKNNRDTVTVSIKCDENDTKSYNVENSNNGEIITVSHVEGYNEFCLEEEYLIEEITCSEEYDDIDLTDYLDKVLVTKFHDLQLKWEKECKLCRHTHSTFEDFINHPCIIDFEEEEEFCCTIKDCDENINNLNAFARHIILTHYEQLESVSIYGKCPDCQKTFSSIIDFNKHSCCRNIKRKSGSPNYCQYCDMDFQSLKRYVFHMQFHLTNRRPKICLLCGDLFQNSNDFFEHTQYKHIPENSMACIKCDRFFKKEEVFKNHMELHEDSKYQYSCTLCPKKYTNKFGLNQHVDTYHNNKSNALRCGHCEKEFVNKLSYRNHMKCHGTDVQVESFICSTCGIISNNSEFIKHHIESDEDSACFSSSIEEATLGFGYTCENCSFDFHTIQQLKAHRLSDTHSDELFYCGICRQSFKSLLHMRNHSSNHKDFKEWQQSFPITRFFVCNIGDCQEFYPIWTTLYYHKRRPHKTPESSISPSKFECQFCQQLCTSKMSLAVHVARSHNNSNIKCPHCKRGLKSQELLQQHIDHYHTKVECEICFKKFKNRRNLESHNNMVHLSIKRYFCKHCEKGYFHKSERDLHEKKVHPKVAFKCEICNFTTNYPESLEIHMDKHNNQLKFQCKLCGKEFGRKQLLKSHLKRHRDKDDYHCANYLKEKGCDASFMSCALLKRHIENTHPNSSHNFNVETDGQSSCNTSKKCSEANLIDNISYEILQINDDSTTEKPHLNYTEFDRNDIELVLENDVEFYVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-