Lvul011094.1
Basic Information
- Insect
- Linnaemya vulpina
- Gene Symbol
- -
- Assembly
- GCA_963675445.1
- Location
- OY776277.1:27246527-27255719[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.055 6.5 8.6 0.7 1 23 1653 1676 1653 1676 0.94 2 12 2 2.4e+02 3.7 1.0 1 23 1839 1861 1839 1861 0.93 3 12 0.00077 0.092 14.5 2.8 2 23 1864 1885 1864 1885 0.97 4 12 3.8e-05 0.0045 18.6 0.2 3 23 1893 1913 1891 1913 0.98 5 12 7.6e-06 0.0009 20.8 5.8 2 23 1920 1941 1919 1941 0.97 6 12 8.7 1e+03 1.7 0.1 5 23 1954 1972 1953 1972 0.96 7 12 0.037 4.4 9.2 0.1 2 23 2011 2031 2010 2031 0.96 8 12 0.00024 0.029 16.1 0.3 1 19 2037 2055 2037 2059 0.95 9 12 5.2e-06 0.00061 21.3 1.8 1 23 2067 2089 2067 2089 0.99 10 12 0.00018 0.022 16.4 6.5 1 23 2095 2117 2095 2118 0.96 11 12 0.0011 0.13 14.0 6.4 1 23 2123 2145 2123 2145 0.99 12 12 0.0029 0.35 12.6 5.8 1 23 2151 2173 2151 2174 0.96
Sequence Information
- Coding Sequence
- atggcGGAAAACGTTCAGTGCCCCGTATGCACTTTATACCTGCATGCCGGTATGAACCTTTCAGATCACTTGGAAACGCATCCGAAAGAACAAGTAATTAGAGCCCTAGTACAAATGACTATATCTGGAACAGGAGTTGGTAATAATAAGAGCAATACGTTAGCATCTGCTTTAGCTGGAGAAAATACAAAAGGCAGTGGTActaatattaaatcaaatgaTTTGGAGAAGAAGCCTTTGACAAGTATTAAAGATAATGAGTCTGATAACGGTAGTGAAGGCAATAGTTGTAGTGCTACTATAAGTAGTTCTGCTAGCAATTCTTCATTGTCAAACCAAAGTGTTACCAGTAGTCAAATTGTGAACAACGTTGTCAATGTCTCCGATACAAAAATTGatagaaataacaaaaacgaGCATGAATCTATTATTCCGGTCAATAAGTTAGTTAAAACCGAAACTCCGAATACAGCTACATTGGCAAAGACTGGTGCGCCTGCAAATGAAAATACGGATCACTGTTTTTCAAAGCAGAACTTCAACCCGACAAGTCTAACATTAAATTCAACGACAAATGCAAGTCATGGATTTCATCGAAATTCAGTCGAATTGCCAAATGCAACacaaaatattcataataattttaatattatcggTAGTAACACTCGTTATGAACAACAACAGCGTAATGGTGTTAATAGTCAAAGTAAACAATCTGATATACCGCACATGCCACCACCGCCACCTCCAGCATCTCCTCAAAGTCAACTTACAGGTATGTCAGCAGGATCTCATGGAACATTTCATCAAATGCAGCCACAACAGCTGCCTCCACCACCCCCACCGCATGTTAGTTCGACGCATTTAAGCAATTCTAATAGCGGCAGCCGTCAGGCTCATATGTATACGGCCGAGCAACATCAGCAGTCTCCGACAATTTCTCATCACACCCAAAGCTTAAAGGTTATATATACACCTAACTTGCCACCACCACCGCCGCTACAGcTATTTACTTATCAACCACAAACACATTTGCAACAGCATCAAAAACCCCCACCGGCCTATGGCGCTGCAATTAGTCAAATACGATCTCAGCATAATCAGAATAAACACCAGcaacagcagctgcAGCAACACCAAAATAATTTGCAACAACACCAAATGCTGCAGCATAATTTAAGAATACAATTACCACCGCAGCCACCTCCATCTCCAAATCTTACAAAACATGCACATTCACCAAAAACCAATGATTTGCCCAATCATTCAACAAATTCTAGGCAGAGTCAATCGCAACAATCCAAAACAGATTTGTCACAACGCCAACAGCAGCAGGAACAGCAACTACCGCAGGCTATATCGGAACATACGCAGAACTCAAACAATCAGATTTACAGTTCACGtgatatttcaaacaaatctcCAATAAAAGGAACATCTTCAGCGGCAACGCAAAATTCCAATGATAATGTACCTCCAAATCCACAACTTTCAATTAGTCCTTCTACTGCTTCGGCTTCAATGGCAGCTGTAGCGGCATCAACATTGGGACGACATACCAACTCACCATTTGCTGCGTTATTAGCAGCTGCTGCTGGTGCTCCATCCCCTTCAAATACTTCGTCAGTTTTAAGATATGCAGAGTCGCCAGTTGCTCATTATTTGGAAAGGGAAAATGGTGATTTTATTGTACAAGAAACTCCTAAGCATATTGTAGAATGTGTTGAAACAGACAATGGAGAATTTTCTGTCATTGAACGTATATATCAATCACCACCCAGTGTTTTACACATTCATGACGacaatgatgatgacgatgaagacGAAGATGAAGATAAGTGCAAAGATCGGATTGAAGATGAACAGCATGAGAATGCTGATAGTAACCTGAAACAACATGAAATTAATGATGGTGAAAGTGAAAAGAGGAAAGAAGATTTAGATGATAAGCAACGAAAAACTTCCTCGAAGGATGTTAAATCGAAGAAgactaaaagaaaaactaattcCGATGCACAAACTTCAGTTGGTAAAGAGATTGTGGATTTTGTAAGCATTTCTAGTGACAGCGGAGATGAAGAAGAATTTATATCTCAAGAAAGAAAAGATCATAAAGCTATCacggaaaataataaaaataatttatcctCATCCAGTTGCAGCATCTCACTATCAACAATGTCTACGCAGTCTTCATCGACATCTTCGTCCATGTCGTCTATATTAGCAGTTGGAGATCAGCAAAATTCTTCAACAACCTCGTTTTCCTCGTCTTTAGGATCGTCGAACACAACACCTACACAAAGCTCTGGAGGTACCACCAACAGTAACACCACTAGTCGAAAGAAATCATCTAAAAACACAATTACAGTTTTAAGCGatgttcaattaaatttaaacgaaTATTTGGATCTGGTAGGAAATATAATTGCTTCGAGTAAAGTAGCAGCACAGCGTAAAGCATTGGCATCCAATGCTCCCATATCTCTGgtcaaaatcgaaaaagaaGAACCAATGGATGAATACgtagaaacaaatataacaaTATCATCAGAGACAGCAATTTCAGCAAATTCCGAAAAAACACCACCTTTCAAGGCCAACAAACATGAGACTGAAGATATAACTGATAACCCTAATAGTAGTTGTAGACAACAAACAAGAAttaatcataatataattttaacaaacgAACAAGAACAAGAAGAACAGGACGAGAAAAAACCACAAGTGTTAGTAAATGCACATGAGAACGAAACAACTTCAATCACGATTACCAATCCTTCTGCTAGCCTTATGACTATAAATTCCAGTCAAGTTACCAGTGTTATACGTATGGCCACAACTAGTCAACATCAGCAGCAAGAACAGCTGACAAATTCCGTGGGAAGCAATAAAAATTCTAATGAAGCTCAAGACTTATCACGATCACAGCAGAAGGTTCATTCTActgcaaattttaaaacatcGGCCCAAACCTCTTTGGCTCGCAGAGGTCCAAAAAAATTAGTAATTAAGCCAAAATCTACAAAGACTGAAGTTTTGACAACCTTAAATACTGCAAGCGAACCAAACCTAAATCAAACTAATGATGATAAAGAACTGCCTACTACTTCTTCTAAGGCTGAGGAAAGTTATACAAAAGATATATTGCCCGAAGAAGATCCGCTAAATACATcagatataaaagttaaaaatgaaCCCATTACATCTATGACATATGAAAACCTCCAACAGCAACCTCAATATCAATCAAGCTCAAGTTTCAGTATCTTAGAGCAGCATCTAAGTTCAAAAGAACCCATTCTCGAGTTTAAAGAGGAAAAACCTTGCATAACTGAAACTAGTTTGCCGTCAACTACGATCATAAAGGAAATGAAGATAGAAAACAATGTAAATGACGATGCCCGTGTTCTATATGACTTTGCTAATTCTAAGAAAACACAAAACGAATCACCGTCAACATTTCCATCTTCCACATCTCTTTTTTCAAGCAAACAAACTTCCTCTGATATAACATCATTCGAAGGACTACAAAGCCAAGAACTTAACAAAAACATCAGTCATGATAATGAGacatcatcctcatcatcatcatcatcaacgtATTCTTCACAGTCAGCTATGGATACTTCAATGCCACCGCAGGAGCAAAATGAAAGTTCAGCTGCAAGTGCTTCTGTTCCTACAACTgctcaaaatcaacatcagttgtaTACTgactttcattttaattatcttTATAATCATGGTAGCAATAATGTGACTTCCGTTGCACCAGAACATGCCGACATTAAGAACCATCAACAATTTTCTCCATTTTATCAAAATTCtaccaataataataatactatgTTGCTGGAAGACTCATCTTCTAGTAAACACTATACAGACTACCAGCAATTTCAAAACAATCATCATCACTTGCAACAACATCAGGTTGCTGGCACAACACCTCACGATCAATGgtttaacaataacaattacCCCACTTCGGGACCCAATGTTACACCAATTACTTCAAACCATTCGATGTCTAATATGAACAGTGGTTTATCTATTGATGCTAACACCACAGCATTAGATAGCAGTGAAACCGGTAAATATCTAGATTTGGATTTATGCAAAAGAGAGCAAAGCATTGACATCATTGCTGGCAATCGAGGGACGGTACCACCACCGCCACCACCATCCTCCACAACTTCCTGCTCGTTTAGTGGTACAACTGACAACAGTATGGCTGGTATTTGTTCGACTGCAGTCACTCTGAATATACGTACCGATGAGAAAATGCCCGCTAAAGGTGAAATTTCGGAACAGGAAAGTAATTGTGACATTGATAATTCATGGAGTCAACCGATGTATGGCGATATTTCGGCGCGTTTCTTTAAAACAACGTTTCCCACAATTTTTCCGCAAGACAACGGTTGGAATCATGAAGAATATTTTACTGTACAGGATTTGAGTGCGTCAACAAATGCTCAAGCTACTAACAGCGGAAACAGTAGAATCAaaagCTTTGATCAAACGAGTAGcagcaataacaacataaaTGGAATGCcaatattttcccaaaactCAAATGATAATTGCAACATTGATGTTATGCCATCAACATCATCTAAAATACGTAAGAGACGTAAGCGTACTTCCCAGGACGGCAAAACGCTGCAAGGTAATGCCAAGAGGTTGCAACCAACATCGACCGTAACGTCTCAACAAATGTTAATGCAACATCAAACTGAGTTACCGGGGCTTGAGTTCAGTTTCCAACAGCATCAgcaaattcatttacaacaacagCACTTGCAGCAACCAAGTACATCtgcaacatttttggcaggaccATCAAGTGCAGGTACTGACATAACAACTGGATTTATTGCgcaacatcaacaacagcagcagcaacaacagcagctaccgcaacaacaacaaaagcaacgcACAAAAGTATACGAATGCGGCCATTGTAATGCCAAGTACTCTAAACTTAAAGACCGCAATGCTCACATGATTGACGTTCATAATTATATACGTCAAAATAGAAGACTAGTATGTCCTACAACAGGTCTTGCTACTCCTCTAAACAATGCTGATATGCAAGATGTTGCTTTGCCCACAACGAGTGCAGCTGGTAGCGCCGTAACTTCTGATATACAAAATGTAGACTGTGTGGGTGATTGTAAACAGGGAATagttaaaatagaaaatgaaaatcCCCAACGTGACCTCCCTGTCGAAGAAGCAATCAATGCAACTTTAAGTGCTAAAACTGAAATAATGGAGGATGATAAACAAAGCCTTACCTTGGTGTCCATGAACACATCAAATGTTGAAACAATTCTGGAATACGATACTAAACCACCAACCACTAATTTGCCACTATCACTGACAACCTCCAGCAGTAAATTAACTACACTGTACCGCATGCTAGTTTCGTTCAATATGACAACATTGAAACAAAACCAAAACCTTTCAGAGTTTGATGAGAATCTAATAAAATCTTCAATATTCTTTTGTTACATTTGTCGGCAGAATTTTAATTCAGTAAAGCTATACGATGCTCATTTGACTGAACATCCCGCTGAATGTTTTACATGTGGAAAAAAATTCCAGCGATGGAAAAATTTTTCGTTGCATTTAAAGCGACATTTAGGATGGAAGGAATTTGGTTGTACCGTATGCGATAAGAAATTTGTTGTACGAAGCGCTCTTGTTGAACATATGCGTATGCACTCTGGCTTGTCTCCGCTAAAATGCAAAGTTTGCGgtAAACACTTTAAGCGCTATTCGAACTTAACACAGCATCGTAAGCGACATACGAAACAAATTATTCGTCGAAAGGAATATGTTTGTTATTGTGGAGAAGTTTTACCATCTAAAGCACGTTTCTTATGGCACAAAGAAACTCATGATTCAAAGCCAAAATGCTGTCCACATTGTTGTGATCGTTTCGTGCATGTCAATTCTTTAAGACGACACATACGTCTCGCCCATTCAGATAAATTCGATTATACCGAACCAATGGAGTGCccaatatgtaaacaaatatttgctaaagCTTCCATGAAAGCACACATGGCGACGCATTCCACAGAAACACAATATGACTGTGCTATTTGTAGCAAGTCCTTCTCAACAAAATGGAATTTGAAAATACATTCCTGGGTACATGCAAATCGCACAGCTAAACCATTTAAATGTGAACACTGTCCTAAGGCATTTGTGCGCGAAGTTGACTTCAAGAACCATATGAATTCCCACAAACAAATTAAACCGTACACGTGTGAAGTATGTGGATGTAAATTTATACGCAAATATAATTACATGCGCCATAGAAGAGAGCATCATGGCAATAAAAAGTATACCTGTGATCTATGTAAAAAGTCGTTCCATCGTCATTACTATCTTATCGAACACAGACGCATTCACACAGGCGAAAGACCTTTTCAATGTTCGATATGTGGTAAGAGTTCAACAACCAAAACTAATcataacaaacatttaaaaattcatcaTTCACGTGATCCATTTACAGTGGAGGTTTAA
- Protein Sequence
- MAENVQCPVCTLYLHAGMNLSDHLETHPKEQVIRALVQMTISGTGVGNNKSNTLASALAGENTKGSGTNIKSNDLEKKPLTSIKDNESDNGSEGNSCSATISSSASNSSLSNQSVTSSQIVNNVVNVSDTKIDRNNKNEHESIIPVNKLVKTETPNTATLAKTGAPANENTDHCFSKQNFNPTSLTLNSTTNASHGFHRNSVELPNATQNIHNNFNIIGSNTRYEQQQRNGVNSQSKQSDIPHMPPPPPPASPQSQLTGMSAGSHGTFHQMQPQQLPPPPPPHVSSTHLSNSNSGSRQAHMYTAEQHQQSPTISHHTQSLKVIYTPNLPPPPPLQLFTYQPQTHLQQHQKPPPAYGAAISQIRSQHNQNKHQQQQLQQHQNNLQQHQMLQHNLRIQLPPQPPPSPNLTKHAHSPKTNDLPNHSTNSRQSQSQQSKTDLSQRQQQQEQQLPQAISEHTQNSNNQIYSSRDISNKSPIKGTSSAATQNSNDNVPPNPQLSISPSTASASMAAVAASTLGRHTNSPFAALLAAAAGAPSPSNTSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVETDNGEFSVIERIYQSPPSVLHIHDDNDDDDEDEDEDKCKDRIEDEQHENADSNLKQHEINDGESEKRKEDLDDKQRKTSSKDVKSKKTKRKTNSDAQTSVGKEIVDFVSISSDSGDEEEFISQERKDHKAITENNKNNLSSSSCSISLSTMSTQSSSTSSSMSSILAVGDQQNSSTTSFSSSLGSSNTTPTQSSGGTTNSNTTSRKKSSKNTITVLSDVQLNLNEYLDLVGNIIASSKVAAQRKALASNAPISLVKIEKEEPMDEYVETNITISSETAISANSEKTPPFKANKHETEDITDNPNSSCRQQTRINHNIILTNEQEQEEQDEKKPQVLVNAHENETTSITITNPSASLMTINSSQVTSVIRMATTSQHQQQEQLTNSVGSNKNSNEAQDLSRSQQKVHSTANFKTSAQTSLARRGPKKLVIKPKSTKTEVLTTLNTASEPNLNQTNDDKELPTTSSKAEESYTKDILPEEDPLNTSDIKVKNEPITSMTYENLQQQPQYQSSSSFSILEQHLSSKEPILEFKEEKPCITETSLPSTTIIKEMKIENNVNDDARVLYDFANSKKTQNESPSTFPSSTSLFSSKQTSSDITSFEGLQSQELNKNISHDNETSSSSSSSSTYSSQSAMDTSMPPQEQNESSAASASVPTTAQNQHQLYTDFHFNYLYNHGSNNVTSVAPEHADIKNHQQFSPFYQNSTNNNNTMLLEDSSSSKHYTDYQQFQNNHHHLQQHQVAGTTPHDQWFNNNNYPTSGPNVTPITSNHSMSNMNSGLSIDANTTALDSSETGKYLDLDLCKREQSIDIIAGNRGTVPPPPPPSSTTSCSFSGTTDNSMAGICSTAVTLNIRTDEKMPAKGEISEQESNCDIDNSWSQPMYGDISARFFKTTFPTIFPQDNGWNHEEYFTVQDLSASTNAQATNSGNSRIKSFDQTSSSNNNINGMPIFSQNSNDNCNIDVMPSTSSKIRKRRKRTSQDGKTLQGNAKRLQPTSTVTSQQMLMQHQTELPGLEFSFQQHQQIHLQQQHLQQPSTSATFLAGPSSAGTDITTGFIAQHQQQQQQQQQLPQQQQKQRTKVYECGHCNAKYSKLKDRNAHMIDVHNYIRQNRRLVCPTTGLATPLNNADMQDVALPTTSAAGSAVTSDIQNVDCVGDCKQGIVKIENENPQRDLPVEEAINATLSAKTEIMEDDKQSLTLVSMNTSNVETILEYDTKPPTTNLPLSLTTSSSKLTTLYRMLVSFNMTTLKQNQNLSEFDENLIKSSIFFCYICRQNFNSVKLYDAHLTEHPAECFTCGKKFQRWKNFSLHLKRHLGWKEFGCTVCDKKFVVRSALVEHMRMHSGLSPLKCKVCGKHFKRYSNLTQHRKRHTKQIIRRKEYVCYCGEVLPSKARFLWHKETHDSKPKCCPHCCDRFVHVNSLRRHIRLAHSDKFDYTEPMECPICKQIFAKASMKAHMATHSTETQYDCAICSKSFSTKWNLKIHSWVHANRTAKPFKCEHCPKAFVREVDFKNHMNSHKQIKPYTCEVCGCKFIRKYNYMRHRREHHGNKKYTCDLCKKSFHRHYYLIEHRRIHTGERPFQCSICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01138377;
- 90% Identity
- -
- 80% Identity
- -