Lvul000322.1
Basic Information
- Insect
- Linnaemya vulpina
- Gene Symbol
- -
- Assembly
- GCA_963675445.1
- Location
- OY776276.1:4548373-4553629[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0034 0.4 12.4 3.2 2 23 86 108 86 108 0.96 2 9 0.00047 0.056 15.2 0.1 2 23 114 135 113 135 0.97 3 9 0.87 1e+02 4.9 1.5 1 20 176 195 176 197 0.91 4 9 0.082 9.8 8.1 0.1 2 23 715 737 714 737 0.95 5 9 0.00032 0.038 15.7 0.4 1 21 817 837 817 838 0.95 6 9 0.055 6.5 8.6 6.1 1 23 846 868 846 868 0.97 7 9 3.4e-05 0.004 18.8 7.2 1 23 874 896 874 896 0.98 8 9 0.00065 0.077 14.7 2.8 1 23 902 924 902 924 0.97 9 9 0.075 8.9 8.2 2.9 1 20 930 949 930 951 0.94
Sequence Information
- Coding Sequence
- ATGTTGGCTACGCTTAAAATTAAGGAAGAGCCCCTTGATGAAATTGACGATACGCAGGAAATATATCACCAAGAAGATGTTTTTATGAAGCAACATAATGCTGCAACTTTGGAAAAATCTGCGGTATCAAATAATTTCCACATAGTGGAGGAGAAGGACAGCATCATTACCGTTAGTGCCGCCGACATGAGGTCTGAGGATGAAATGCGGTTTATAGATGCCATAAACAGTCCTGATtcaaataaatttaatggtgTGTGCTCTAAATGTTTAAAGTTCTTTACAAATCGAGCACAATTTTTAAAGCATACCAAACGCAATCATTGTATTACGAAACAAAAGTGCCCAGTGTGCCCAGTCACATTTATAGATGCTAGTTCCATGTTGAATCATTTAAATTTGCATCGGGAAAACTTTTTCTTCTGCTCCCTTCACTGCGGGGCAAATTATGCTACATTGCCGTTGTGTGAAGAACATGAACTTCGGGAACATAAAATTCAAGCGACACCCAAAATTCGCTACAAGCACTTCTGTTCGTTTTGTCGTGAGGGCTTTAAAACTGAACTGCAGTTGCATGTTCATTGGCTGCAGCAAAGTCAGGGTTGCGGCAAACTTATTCAAGACGTTGTACTACACTCTACTAATGTTACTAATAACTATGATAACATCAATACATCGAAAAATCTATTGTTAGATAACCAATTGCAGTCAGCAACTACAAATTCAGTGTCTACAATACCCATTACCAAACTAAGATTGAAATATGACACGACCTCAAGACCTCCAACAAATAAACGACATAGTGACAATAATAATGAAGATACAGCGCAAAAACGCTTCAAAACTTTTGACAAAGTAAAATCTGAAACGGAGAGCAGTCAATTACCTTTCAACTTTGAGACAGGTattcaaataaaagaagaacCTGCGgatgaatatgaaaataacaTAACTTCAAGCTTAGTTCCTgaagttataataaaaactgAAGAGGAAGATAAAACGGAACCAGTGGAACAAATTTGCGGGAAGCCagcaataacaaatttaataataaacaatatgatTGGGCCAGAATCTAATGGAAAGTTTATACCTCTTGAAGAATTTGTCGCTTCCGAAAATGCCAAAAACGAGTCCAGGCCCGATATGAAAACGTTTTCTATTAATAGTACGGTTAATAATACGCTTGTGAATGGTAAAATTGCTACTACGAAAAATCAGAATGTGcctgttttaaaacttcataATATCAACAAAAATACCAATACTCccttaaataatacaataaataaaagtgatgGCAATTTACGATTTGTAAAGATAGCGCCAGCGGCCTTATCTATGCCAAATAAAACTGCTGGCAACTTCAGCCTtacaaatattacaaaatgtaaCACGGTTCCACTATTGCCTGTAAAACTAGCTAATTCTCAAAGCAAAGGAGATAttaaacctttacccaaaagtggattgcaaattataaaatttttgcctAATGCTCAATTAATGTCTATGAAAGCGAATGGCAACAACAATAGCTCATTAGGAGAAAAGCAACCTTTGATTTTTAAAGCATGTAACAACCCAAAAAATAGCTTATTGGGCAATAAGCAAcctatatttcttaaaataaaaacatcaccCTCAATAGCAGCACAAAAGACAAACTTcaaatcaacatcagttctCCCAAACTCAAACTCCAACACCTCCACCCCGACGAGAACAGCATGCACAATATCAAACCCAAATAACAGCACGTCTAACACCGTTTCTATTAAATTGACCTCTCTTGAACAAAATACCACTATTGATGCAGAAGACTTTAAGAAACTACAAGCAGAAGCCCTTATTAAGGCAGAAGAGCATcgcaaaaatctttatataccTAAAACTCGTTTAatgattattgaaaatataccaGAGAAAAAACAACTGATTGATAATATGAAGCAACAAATCGCAGAAGTGGAAACTAAAACCACTGAACAGATTCAAGGAGCACCTGCAGGAAATATTGTATTTGCGAACTCTAAGCAAAATGATGAACCGGTTTCGTTGCACTTGCCAATATTACCCTCAATAGATGTGCCACTAGTACAGGCTCGCTATAAATATCCTAATTACAATTATAAATGGATTTGCCCATATTGTCTAAAGgattatgaaattaaaactgCTCTCAAAATGCACTTGATTAAAGCACATAATTTAAATACGCGtgatatggaaaaaattaatgtgcaaGCAAAGCCATACAAAATTGAAGttgtagaaGAGCCCAATGAAGATATAAAATTCCAAATTAAGGAAGAACCGCATTTACAAGATACCGATTCGCAATcgtttgaaatatatgaaactgaATCCTTAACTGGTGATAGTACATCTTCGTCATCTTCGAAGCTTCCTAAATTAACGAACATTAAAAACCATAGACAACGTTATGTTTGCGATAGATGTGGTCGTACTTGCTCTTCCAAAACTATGCTTAATGATCACATTTTGGCAAATTGTAGTCGTGAACCACAATATTCATGCcaagaatgtaataaaaaattcttttcccATGGTACACTGCAGTGTCATATGACCATACACACCGGCGAACTGCCGCACAAATGTAATTATTGTGATAAACGTTTTCGTACTAGGGGTCAGGTGAAGGTTCATCATCGCACGCATACTGGAGAGAGGCCGTTTTTTTGCCAGGTCTGCTCTCAACGTTTTACGCATCGTGAAACCCTAATTGCTCACTTGTCACGCCACATAGGAATGAAACGTTATAAATGTTATGGATGTGATAAGCATTTCTCCTGCATCAGTGCCTTGAAGACGCATCGTGATTTACGTGCTGATACCTGtggaaaagttaaatttaatccTCGTGCTATTGGTCCCCGCGTTCGTGTCATACGCGGTAATGTTATATTTGAGCCTCAGCCAGAAATTAATCCCTACTTAAAGTCTGAGGATCCCAAAAGCGTATTGTCCGAGTTACAAAACCATTGTGAGGATTCTAAAACTGAATTACGCAGCCATTTGGAGAACACTGAATCCGATTTGTTTAAATTACAAAGATCAGTCTAA
- Protein Sequence
- MLATLKIKEEPLDEIDDTQEIYHQEDVFMKQHNAATLEKSAVSNNFHIVEEKDSIITVSAADMRSEDEMRFIDAINSPDSNKFNGVCSKCLKFFTNRAQFLKHTKRNHCITKQKCPVCPVTFIDASSMLNHLNLHRENFFFCSLHCGANYATLPLCEEHELREHKIQATPKIRYKHFCSFCREGFKTELQLHVHWLQQSQGCGKLIQDVVLHSTNVTNNYDNINTSKNLLLDNQLQSATTNSVSTIPITKLRLKYDTTSRPPTNKRHSDNNNEDTAQKRFKTFDKVKSETESSQLPFNFETGIQIKEEPADEYENNITSSLVPEVIIKTEEEDKTEPVEQICGKPAITNLIINNMIGPESNGKFIPLEEFVASENAKNESRPDMKTFSINSTVNNTLVNGKIATTKNQNVPVLKLHNINKNTNTPLNNTINKSDGNLRFVKIAPAALSMPNKTAGNFSLTNITKCNTVPLLPVKLANSQSKGDIKPLPKSGLQIIKFLPNAQLMSMKANGNNNSSLGEKQPLIFKACNNPKNSLLGNKQPIFLKIKTSPSIAAQKTNFKSTSVLPNSNSNTSTPTRTACTISNPNNSTSNTVSIKLTSLEQNTTIDAEDFKKLQAEALIKAEEHRKNLYIPKTRLMIIENIPEKKQLIDNMKQQIAEVETKTTEQIQGAPAGNIVFANSKQNDEPVSLHLPILPSIDVPLVQARYKYPNYNYKWICPYCLKDYEIKTALKMHLIKAHNLNTRDMEKINVQAKPYKIEVVEEPNEDIKFQIKEEPHLQDTDSQSFEIYETESLTGDSTSSSSSKLPKLTNIKNHRQRYVCDRCGRTCSSKTMLNDHILANCSREPQYSCQECNKKFFSHGTLQCHMTIHTGELPHKCNYCDKRFRTRGQVKVHHRTHTGERPFFCQVCSQRFTHRETLIAHLSRHIGMKRYKCYGCDKHFSCISALKTHRDLRADTCGKVKFNPRAIGPRVRVIRGNVIFEPQPEINPYLKSEDPKSVLSELQNHCEDSKTELRSHLENTESDLFKLQRSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00900069;
- 90% Identity
- -
- 80% Identity
- -