Lvul019737.1
Basic Information
- Insect
- Linnaemya vulpina
- Gene Symbol
- -
- Assembly
- GCA_963675445.1
- Location
- OY776278.1:46025783-46027468[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.025 2.9 9.7 1.0 1 20 155 174 155 176 0.94 2 10 0.08 9.5 8.1 5.0 2 23 188 210 187 210 0.94 3 10 0.0068 0.8 11.5 2.7 1 23 215 239 215 239 0.96 4 10 0.83 99 4.9 0.8 1 23 246 271 246 271 0.89 5 10 0.0016 0.19 13.5 0.2 1 23 348 371 348 371 0.92 6 10 0.017 2 10.2 2.3 2 20 377 395 376 397 0.92 7 10 3.7e-08 4.4e-06 28.1 1.2 3 23 412 433 410 433 0.96 8 10 0.00015 0.018 16.7 3.6 1 23 439 462 439 462 0.95 9 10 0.0013 0.15 13.8 6.8 3 23 470 490 468 490 0.95 10 10 0.014 1.7 10.5 1.0 2 23 497 519 496 519 0.96
Sequence Information
- Coding Sequence
- AtgcaattttgcaatatatgtgTTAAAAATAGTGAACATGTTGCACGAATTAATGAAAGTGAAGTGACTTGTGCTGGTGATGTGAAAATAACACATTTATTACATATCTTTCGAAATAATATAGTCAAGTATCTCTTGGACGACAGTGACAGTgttatttgcaatatttgtttaaagcaattaaaaagttGCTTTCAATTCGTCCAACAACTGAAAAAAGCAGACTACATATTAAACAGGGGTAAGGAAATCAAAACGGAACATGATTATTTCCTAACGAGGAATGGTGTTGGAGTTGAAACAGCAGATGCAAAAGTAACGGAAGACAACGAGAAGTGCAATAAACATGAAAGTTTAGACGATATTACACCTAAACTGAACTTCAGACCAATCTTACCAAAAACATCTACGAATTTGGTTAGTGCAAATGTGAAAAAGTCTCAAAACACAAAACCGCGTTACTACAAATGTTTACAGTGCCCGGCATTGTTTAAAtcatataaacatttaaatgaacACGAAAaagatttttgcaaaaataaattcgttaaatatataaaagtatgcaAATTCTGTCATAAGTGTTATTACAAAGAGAATTCATTAAGTGAACATATATCTTTAAATCACGATCAAGGACAATTTTCATGTTCCCTGTGTCAAGATAAAACTTTTACTGCTAAAGGATATTTGTGTCGTCATATCCAAAAAGTACATAAACATGAAAGCTTACAATATTTTTGTGGAGTATGTACAGACGTGCTATGCTTCCCTTCGCAGGAAGAATTACGTGAACACTTTTTGCAAACTCATCCTCCGGAGAATATGACAACAGCCATAGAAAATCAAGATATAAGTACATTAAATGAAGATGATATGGATTTAGACATGCATGAAGAATTTTTGGATGAATTTTTACTTGCTCATACTAatgaaaattcttttcaattttccGAATGCTGGGAAACCTTAGACTTGCATTTGCCGGATATGCTGCAAGAAAGTGCAGCCAACATCAACGCCCAAGAATTTACGCAAGCATTTTCTTGTCCAAAATGTTTCGAGCAGTTTAAGAATCCCCAACCGTTACTAAAGCATTTGGCTGACATACATGACTTACCCGTTTTAATATGCCGAGTATGTAGTAAATGTTTTGCATCTTTTAAGGATTTTAGAAAGCACAAACTGCtgaaatgtattaaaaactcTGCACTTCATTCTATAACACTTGATTGTCCTTACTGTAGTAAAAAGTTTAAGAACAGCTCGAATCTTAAGAAACATTTACGTGTTGTGCACTGTCAactcaaaaaacatatatgcCAGTTGTGCGACAAACAATATTCAACGTTGGACCATTTGAAGAAACATGTCTTGAGCCAGCATCAAAATGAACGCAAACATTTGTGTACAGTATGTAATAAGAAATTTACACAATTGTGccatttaaaacaacatttgGCAATACATACCACAGGTAAAACAATACAGTGTTCGGAATGCAATTTAAAGTTCTGGCGAAAGATTGATTTTGCACGACATCGCATGAAGAATCATGTTTCTGAAATTGGTGGCAAATAA
- Protein Sequence
- MQFCNICVKNSEHVARINESEVTCAGDVKITHLLHIFRNNIVKYLLDDSDSVICNICLKQLKSCFQFVQQLKKADYILNRGKEIKTEHDYFLTRNGVGVETADAKVTEDNEKCNKHESLDDITPKLNFRPILPKTSTNLVSANVKKSQNTKPRYYKCLQCPALFKSYKHLNEHEKDFCKNKFVKYIKVCKFCHKCYYKENSLSEHISLNHDQGQFSCSLCQDKTFTAKGYLCRHIQKVHKHESLQYFCGVCTDVLCFPSQEELREHFLQTHPPENMTTAIENQDISTLNEDDMDLDMHEEFLDEFLLAHTNENSFQFSECWETLDLHLPDMLQESAANINAQEFTQAFSCPKCFEQFKNPQPLLKHLADIHDLPVLICRVCSKCFASFKDFRKHKLLKCIKNSALHSITLDCPYCSKKFKNSSNLKKHLRVVHCQLKKHICQLCDKQYSTLDHLKKHVLSQHQNERKHLCTVCNKKFTQLCHLKQHLAIHTTGKTIQCSECNLKFWRKIDFARHRMKNHVSEIGGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00900068;
- 90% Identity
- -
- 80% Identity
- -